RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ADH5P11766 374 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 STIP1P31948 543 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 GGCXP38435 758 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 PLK1P53350 603 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 GEMIN4P57678 1058 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 RPS24P62847 133 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 OTUD4Q01804 1114 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 BYSLQ13895 437 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 ALFQ53S48 1182 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 AADACL2Q6P093 401 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 PARM1Q6UWI2 310 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 SYDE1Q6ZW31 735 aaPredicted RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 MFN1Q8IWA4 741 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 PRELID2Q8N945 189 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 PPM1EQ8WY54 764 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 MS4A14Q96JA4 679 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 LRRC3BQ96PB8 259 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 BBS2Q9BXC9 721 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 MAGEB5Q9BZ81 275 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 KLC2Q9H0B6 622 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 MPP6Q9NZW5 540 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 AMACRQ9UHK6 382 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 FBXO10Q9UK96 956 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 SLC27A6Q9Y2P4 619 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 SNX10Q9Y5X0 201 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 WNT6Q9Y6F9 365 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 NUMBLQ9Y6R0 609 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 COL4A2P08572 1712 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 SHROOM3Q8TF72 1996 aa16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 NYNRINQ9P2P1 1898 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-212ENST00000545856 BCLAF3A2AJT9 711 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 C2CD4DB7Z1M9 353 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 LOC730098B7Z3J9 87 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 H0Y626 953 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 LIASO43766 372 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 MFSD11O43934 449 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 CNTN5O94779 1100 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 RHOCP08134 193 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 GLULP15104 373 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 VCPP55072 806 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 PFKPQ01813 784 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 PPIDQ08752 370 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 DHX34Q14147 1143 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 POLD3Q15054 466 aaPredicted RBP16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 LY6G5CQ5SRR4 150 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 RHBDF2Q6PJF5 856 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 C4orf22Q6V702 233 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 MAATS1Q7Z4T9 603 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ATPAF2Q8N5M1 289 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ATL2Q8NHH9 583 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 CCHCR1Q8TD31 782 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 WFIKKN2Q8TEU8 576 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 CASKIN2Q8WXE0 1202 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ACDQ96AP0 544 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ZNF599Q96NL3 588 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 QKIQ96PU8 341 aaKnown RBP eCLIP16.42■□□□□ 0.222e-31■■■■■ 60
PRPF40A-212ENST00000545856 VAT1Q99536 393 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 HERPUD2Q9BSE4 406 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ECT2Q9H8V3 914 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ETNK2Q9NVF9 386 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 PCYOX1Q9UHG3 505 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 COL4A3Q01955 1670 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 TICRRQ7Z2Z1 1910 aa16.42■□□□□ 0.22
PRPF40A-212ENST00000545856 ARNTLO00327 626 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 PDE2AO00408 941 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 NDC80O14777 642 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 GAS8O95995 478 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 RBP3P10745 1247 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 TYRP14679 529 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 CCNCP24863 283 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 GARSP41250 739 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 DYNLT1P63172 113 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 GNA12Q03113 381 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 GBE1Q04446 702 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 SULT2A1Q06520 285 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 ADCY2Q08462 1091 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 RUNX3Q13761 415 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 RFTN1Q14699 578 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 EIF4HQ15056 248 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 OASLQ15646 514 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 ANO4Q32M45 955 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 ITPRIPL2Q3MIP1 535 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 GLE1Q53GS7 698 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 SLC45A4Q5BKX6 768 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 CXorf57Q6NSI4 855 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 CCDC70Q6NSX1 233 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 NUDT18Q6ZVK8 323 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 ARHGAP12Q8IWW6 846 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 ADHFE1Q8IWW8 467 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 NPWQ8N729 165 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 DCAF4L2Q8NA75 395 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 CCDC26Q8TAB7 109 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 TFB1MQ8WVM0 346 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 C2orf49Q9BVC5 232 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 BRD9Q9H8M2 597 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 HPCAL4Q9UM19 191 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 HEY1Q9Y5J3 304 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 MYO10Q9HD67 2058 aa16.41■□□□□ 0.22
PRPF40A-212ENST00000545856 MIA3Q5JRA6 1907 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms