RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ACBD5Q5T8D3 534 aaPredicted RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 OLFML1Q6UWY5 402 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 FAM183BPQ6ZVS7 135 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 MMAAQ8IVH4 418 aaKnown RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 TMEM35BQ8NCS4 154 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 ZNF397Q8NF99 534 aaPredicted RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 ADAMTS14Q8WXS8 1223 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 SPAG5Q96R06 1193 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 PRMT1Q99873 361 aaKnown RBP13.53□□□□□ -0.24
RTN3-212ENST00000543123 NDST4Q9H3R1 872 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 MTG2Q9H4K7 406 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 IL21RQ9HBE5 538 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 SLC25A13Q9UJS0 675 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 KLK13Q9UKR3 277 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 ZMIZ1Q9ULJ6 1067 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 STAP1Q9ULZ2 295 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 FREM2Q5SZK8 3169 aa13.53□□□□□ -0.24
RTN3-212ENST00000543123 SPEGQ15772 3267 aa13.52□□□□□ -0.24
RTN3-212ENST00000543123 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 A0A1W2PP55 124 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 FAM221BA6H8Z2 402 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 CBFA2T3O75081 653 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 CLDN11O75508 207 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 GRAP2O75791 330 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 GOT1P17174 413 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 CTSOP43234 321 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 VASPP50552 380 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 PLK1P53350 603 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 GALCP54803 685 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 PITX1P78337 314 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 BNC1Q01954 994 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 SLC6A3Q01959 620 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 APBA1Q02410 837 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 ZNF177Q13360 481 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 KIF19Q2TAC6 998 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 VWA3BQ502W6 1294 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 CT47A1Q5JQC4 288 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 FAM46CQ5VWP2 391 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 NCEH1Q6PIU2 408 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 SLC47A2Q86VL8 602 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 FAM71AQ8IYT1 594 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 APCDD1Q8J025 514 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 CHCHD4Q8N4Q1 142 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 WDTC1Q8N5D0 677 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 RHBDD1Q8TEB9 315 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 RPL10LQ96L21 214 aaKnown RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 TUBGCP2Q9BSJ2 902 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 TMEM121BQ9BXQ6 578 aaPredicted RBP13.52□□□□□ -0.25
RTN3-212ENST00000543123 SIX2Q9NPC8 291 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 SNX11Q9Y5W9 270 aa13.52□□□□□ -0.25
RTN3-212ENST00000543123 NUMA1Q14980 2115 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 A0A1W2PPC4 97 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 M0QYT0 321 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 FOXN3O00409 490 aaPredicted RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 VILLO15195 856 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 YKT6O15498 198 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 SLC7A4O43246 635 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 LSM8O95777 96 aaKnown RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 F9P00740 461 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 IL1BP01584 269 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 ERBB2P04626 1255 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 IGHV4-34P06331 123 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 MZF1P28698 734 aaPredicted RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 NUDT1P36639 197 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 SCNN1AP37088 669 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 STK19P49842 368 aaPredicted RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 CCR5P51681 352 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 AUHQ13825 339 aaKnown RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 RAPGEF1Q13905 1077 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 PTPN20Q4JDL3 420 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 SLC45A4Q5BKX6 768 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 BRMS1LQ5PSV4 323 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 FBXL22Q6P050 247 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 CIR1Q86X95 450 aaPredicted RBP13.51□□□□□ -0.25
RTN3-212ENST00000543123 STK40Q8N2I9 435 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 OR8D1Q8WZ84 308 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 CCDC114Q96M63 670 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 NUP62CLQ9H1M0 184 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 NEUROG2Q9H2A3 272 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.51□□□□□ -0.25
RTN3-212ENST00000543123 SERGEFQ9UGK8 458 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 SLCO3A1Q9UIG8 710 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 VPS28Q9UK41 221 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 VANGL2Q9ULK5 521 aa13.51□□□□□ -0.25
RTN3-212ENST00000543123 DMXL2Q8TDJ6 3036 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 C1QTNF3-AMACRE9PGA6 284 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 ALOX15BO15296 676 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 PCDHGA12O60330 932 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 PAGE1O75459 146 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 TPM2P07951 284 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 EEF1GP26641 437 aaKnown RBP13.5□□□□□ -0.25
RTN3-212ENST00000543123 CLCN1P35523 988 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 CTSKP43235 329 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 ADPRHP54922 357 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 CDH4P55283 916 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 KRT83P78385 493 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 CENPCQ03188 943 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 KCNJ12Q14500 433 aa13.5□□□□□ -0.25
RTN3-212ENST00000543123 DPCR1Q3MIW9 517 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms