RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LPIN1Q14693 890 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 BSPRYQ5W0U4 402 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 MSANTD2Q6P1R3 559 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 CRLF3Q8IUI8 442 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 NUDCD3Q8IVD9 361 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.1□□□□□ -0.79
SS18-205ENST00000542420 RNF169Q8NCN4 708 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 DQX1Q8TE96 717 aaKnown RBP10.1□□□□□ -0.79
SS18-205ENST00000542420 PTPRN2Q92932 1015 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 RETREG1Q9H6L5 497 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 AGO3Q9H9G7 860 aaKnown RBP10.1□□□□□ -0.79
SS18-205ENST00000542420 TXNDC16Q9P2K2 825 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 SOX13Q9UN79 622 aa10.1□□□□□ -0.79
SS18-205ENST00000542420 ANXA9O76027 345 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 SNUPNO95149 360 aaKnown RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 ITGA2BP08514 1039 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 T-ENOLP0DO92 83 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 SLC2A3P11169 496 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 BGNP21810 368 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 MAGEA11P43364 429 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 CCNG1P51959 295 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 LIMK2P53671 638 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 KCNJ2P63252 427 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 CDH17Q12864 832 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 NFE2Q16621 373 aaPredicted RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 SLC5A9Q2M3M2 681 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 OVOS1Q6IE37 1185 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 GPRIN1Q7Z2K8 1008 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 TAC4Q86UU9 113 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 DCP1BQ8IZD4 617 aaKnown RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 SREK1Q8WXA9 508 aaKnown RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 SLC7A6OSQ96CW6 309 aaPredicted RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 NSL1Q96IY1 281 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 C1orf74Q96LT6 269 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 FCRL5Q96RD9 977 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 KLF6Q99612 283 aaPredicted RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 RBBP8Q99708 897 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 TSEN34Q9BSV6 310 aaKnown RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 TMEM120AQ9BXJ8 343 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 OXCT2Q9BYC2 517 aaPredicted RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 TKTL2Q9H0I9 626 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 RGS18Q9NS28 235 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 SPATS2LQ9NUQ6 558 aaKnown RBP10.09□□□□□ -0.79
SS18-205ENST00000542420 ZFATQ9P243 1243 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 OR12D3Q9UGF7 316 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 VANGL2Q9ULK5 521 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 ANKRD6Q9Y2G4 727 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 MFHAS1Q9Y4C4 1052 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 GREB1Q4ZG55 1949 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 MIA3Q5JRA6 1907 aa10.09□□□□□ -0.79
SS18-205ENST00000542420 LRIG2O94898 1065 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 OAZ2O95190 189 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 MAP3K6O95382 1288 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 ASGR1P07306 291 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 KRT16P08779 473 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CTGFP29279 349 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CD52P31358 61 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 THPOP40225 353 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 RPS6KA3P51812 740 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 FAM189BP81408 668 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TNK2Q07912 1038 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SMARCB1Q12824 385 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 AFMIDQ63HM1 303 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CASC4Q6P4E1 433 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CDHR3Q6ZTQ4 885 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 RASSF3Q86WH2 238 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 ARHGAP24Q8N264 748 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 ZSCAN18Q8TBC5 510 aaPredicted RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 RDH11Q8TC12 318 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 NDRG1Q92597 394 aaKnown RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 TBC1D31Q96DN5 1066 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 THOC1Q96FV9 657 aaKnown RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 C8orf48Q96LL4 319 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SERPINB11Q96P15 392 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 IL12RB2Q99665 862 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 GORASP1Q9BQQ3 440 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 MCMBPQ9BTE3 642 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 MAGEB5Q9BZ81 275 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 EBF2Q9HAK2 575 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SYBUQ9NX95 663 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 NEU3Q9UQ49 428 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 NYNRINQ9P2P1 1898 aaKnown RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 NUP205Q92621 2012 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 MOXD2PA6NHM9 499 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 CASTOR2A6NHX0 329 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 MEIS3P2A8K0S8 358 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TNFRSF10BO14763 440 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SYN3O14994 580 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 PLIN3O60664 434 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 B3GAT3O94766 335 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 SERPINE1P05121 402 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 ALOX15P16050 662 aaPredicted RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 CCR1P32246 355 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 GRIA1P42261 906 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TMPRSS15P98073 1019 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 DSC1Q08554 894 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 BST1Q10588 318 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 UGP2Q16851 508 aa10.08□□□□□ -0.8
SS18-205ENST00000542420 TAF1BQ53T94 588 aaPredicted RBP10.08□□□□□ -0.8
SS18-205ENST00000542420 PLEKHG4Q58EX7 1191 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms