RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 ALDH16A1Q8IZ83 802 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CADM3Q8N126 398 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DEPDC4Q8N2C3 294 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC22A8Q8TCC7 542 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 C1orf54Q8WWF1 131 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 STON2Q8WXE9 905 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ECSITQ9BQ95 431 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 AIFM2Q9BRQ8 373 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ELOVL4Q9GZR5 314 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 UPF3AQ9H1J1 476 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 EBF3Q9H4W6 596 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PPCSQ9HAB8 311 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 C8orf4Q9NR00 106 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CRNNQ9UBG3 495 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ZNF212Q9UDV6 495 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ANGPTL2Q9UKU9 493 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 GABRQQ9UN88 632 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DERAQ9Y315 318 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CITO14578 2027 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KAT6AQ92794 2004 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SCN10AQ9Y5Y9 1956 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 MOXD2PA6NHM9 499 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 PRMT3O60678 531 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 TTC4O95801 387 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ESRRAP11474 423 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 AKR1A1P14550 325 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CTRB1P17538 263 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CA4P22748 312 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 IL32P24001 234 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SPARCL1Q14515 664 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DAB2IPQ5VWQ8 1189 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CTRB2Q6GPI1 263 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DENND1BQ6P3S1 775 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC25A41Q8N5S1 370 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 GOT1L1Q8NHS2 421 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 C10orf82Q8WW14 230 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ADPGKQ9BRR6 497 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ZNF518BQ9C0D4 1074 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 AP5M1Q9H0R1 490 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 LHX5Q9H2C1 402 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 ALG13Q9NP73 1137 aaKnown RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CD93Q9NPY3 652 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 DPP3Q9NY33 737 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 SNTG2Q9NY99 539 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 CNTN3Q9P232 1028 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 HEY2Q9UBP5 337 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 GPC6Q9Y625 555 aaPredicted RBP8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 NUMBLQ9Y6R0 609 aa8.19□□□□□ -1.1
PDLIM5-221ENST00000542407 KANSL1LA0AUZ9 987 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 FAM47E-STBD1D6RA91 191 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 IFRD1O00458 451 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 PPEF2O14830 753 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 SPOPO43791 374 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 DUSP11O75319 330 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 GNRH1P01148 92 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KRT4P19013 534 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 COILP38432 576 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC1A1P43005 524 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 YWHAEP62258 255 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CYP1B1Q16678 543 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CRTC2Q53ET0 693 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KLC3Q6P597 504 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 NOTUMQ6P988 496 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 C16orf54Q6UWD8 224 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 OTOAQ7RTW8 1153 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CATSPER4Q7RTX7 472 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 RASSF3Q86WH2 238 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 RAVER1Q8IY67 606 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 HPDLQ96IR7 371 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 TSGA13Q96PP4 275 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CCDC77Q9BR77 488 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 HERPUD2Q9BSE4 406 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KATNAL1Q9BW62 490 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KLHL4Q9C0H6 718 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 NXF3Q9H4D5 531 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CYP3A43Q9HB55 503 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 AAASQ9NRG9 546 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 NDE1Q9NXR1 346 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 RPL26L1Q9UNX3 145 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 HES2Q9Y543 173 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 THSD7BQ9C0I4 1608 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 TRIP12Q14669 1992 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 C17orf102A2RUQ5 167 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 TMEM191CA6NGB0 347 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 TRAFD1O14545 582 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 EDF1O60869 148 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CDH16O75309 829 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 EPN2O95208 641 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CYP3A5P20815 502 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CFL1P23528 166 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 AXLP30530 894 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CBX5P45973 191 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 RPL7AP62424 266 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 OGDHQ02218 1023 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KRT17Q04695 432 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 ORC1Q13415 861 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CLUL1Q15846 466 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CDONQ4KMG0 1287 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 XKR4Q5GH76 650 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms