RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 HNRNPLLQ8WVV9 542 aaKnown RBP12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 ERCC4Q92889 916 aaPredicted RBP12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 KREMEN1Q96MU8 473 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 SPAG5Q96R06 1193 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 PPP1R9BQ96SB3 815 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 KDM4CQ9H3R0 1056 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 ERVMER34-1Q9H9K5 563 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 AASDHPPTQ9NRN7 309 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 SLC12A6Q9UHW9 1150 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 XPO7Q9UIA9 1087 aaKnown RBP12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 SLCO3A1Q9UIG8 710 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 MAN1B1Q9UKM7 699 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 CEP83Q9Y592 693 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 DSPP15924 2871 aaKnown RBP12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 APC2O95996 2303 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 ACACAQ13085 2346 aa12.4□□□□□ -0.42
CBX3P4-202ENST00000540428 PTPRBP23467 1997 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 FAM149AA5PLN7 773 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 KCNU1A8MYU2 1149 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 SLC7A4O43246 635 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 MAGEC1O60732 1142 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 CALCAP01258 141 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 IL1BP01584 269 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 AFPP02771 609 aaKnown RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 GLI1P08151 1106 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 SLC2A3P11169 496 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 ABCB4P21439 1286 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 EPHA8P29322 1005 aaPredicted RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 HNF1BP35680 557 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 RXRGP48443 463 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 PSMD8P48556 350 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 NXPH1P58417 271 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 OVGP1Q12889 678 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 MTA1Q13330 715 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 SHBQ15464 509 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 SMYD5Q6GMV2 418 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 NAPEPLDQ6IQ20 393 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 DENND1BQ6P3S1 775 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 ENOSF1Q7L5Y1 443 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 DSG4Q86SJ6 1040 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 GATAD2AQ86YP4 633 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 APCDD1Q8J025 514 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 OR14C36Q8NHC7 312 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 SERAC1Q96JX3 654 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 CNDP2Q96KP4 475 aaKnown RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 RPL10LQ96L21 214 aaKnown RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 FAM81BQ96LP2 452 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 PRMT1Q99873 361 aaKnown RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 THAP9Q9H5L6 903 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 DMTF1Q9Y222 760 aa12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 COL5A1P20908 1838 aaPredicted RBP12.39□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3DA0A087WVF3 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3IA0A087WXS9 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3EA0A087X179 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3KA0A087X1G2 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 A0A1B0GVM2 712 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3FA6NER0 549 aaPredicted RBP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TCAF2A6NFQ2 919 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 PPP1R3GB7ZBB8 358 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3LB9A6J9 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 E5RJQ4 531 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TLR4O00206 839 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 RFPL3O75679 317 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3HP0C7X1 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 KRT5P13647 590 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 CCR1P32246 355 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 DRD3P35462 400 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 ACADVLP49748 655 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 ILKQ13418 452 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 CCDC157Q569K6 752 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 RABGAP1LQ5R372 815 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 PRAMEF14Q5SWL7 426 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 FAM46CQ5VWP2 391 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3GQ6DHY5 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3CQ6IPX1 549 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 KLHL10Q6JEL2 608 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 PRPF39Q86UA1 669 aaKnown RBP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 IQCHQ86VS3 1027 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 MARCH9Q86YJ5 346 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TBC1D3Q8IZP1 549 aaPredicted RBP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 CCAR2Q8N163 923 aaKnown RBP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 MFSD2AQ8NA29 543 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 FRS2Q8WU20 508 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 NELFBQ8WX92 580 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 ZNF606Q8WXB4 792 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 TSC1Q92574 1164 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 NXPE2Q96DL1 559 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 INTS2Q9H0H0 1204 aaKnown RBP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 ASNSD1Q9NWL6 643 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 LAMA5O15230 3695 aa12.38□□□□□ -0.43
CBX3P4-202ENST00000540428 WNT9AO14904 365 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 ALOX15BO15296 676 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 PLRG1O43660 514 aaKnown RBP12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 ATP9BO43861 1147 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 LETM1O95202 739 aaPredicted RBP12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 JUPP14923 745 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 PDGFRAP16234 1089 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 BMP6P22004 513 aa12.37□□□□□ -0.43
CBX3P4-202ENST00000540428 GNA15P30679 374 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms