RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 BECN1Q14457 450 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 C9orf64Q5T6V5 341 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 DTX1Q86Y01 620 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 WDR49Q8IV35 697 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 GPD1LQ8N335 351 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 BTN2A2Q8WVV5 523 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 USP7Q93009 1102 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 ABHD17AQ96GS6 310 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 CMKLR1Q99788 373 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 SMOQ99835 787 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 DNAI2Q9GZS0 605 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 MARCH2Q9P0N8 246 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 CA5BQ9Y2D0 317 aa9.51□□□□□ -0.89
USP28-205ENST00000537706 A0A1B0GTL3 188 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 ZNF233A6NK53 670 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 A6NNZ2 444 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 C1QTNF3-AMACRE9PGA6 284 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 NTN3O00634 580 aaPredicted RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 SLC31A1O15431 190 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 HNRNPRO43390 633 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 EIF5BO60841 1220 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 DTNBO60941 627 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 SEMA7AO75326 666 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 HGFP14210 728 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 HNRNPA2B1P22626 353 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 MZF1P28698 734 aaPredicted RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 DDIT3P35638 169 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 PDX1P52945 283 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 COPB1P53618 953 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 ELAVL3Q14576 367 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 DEFB133Q30KQ1 61 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 TIPARPQ7Z3E1 657 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 PTAR1Q7Z6K3 402 aaPredicted RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 STK40Q8N2I9 435 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 OR13H1Q8NG92 308 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 RASSF8Q8NHQ8 419 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 LMX1AQ8TE12 382 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 SYAP1Q96A49 352 aaPredicted RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 JAKMIP2Q96AA8 810 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 TTC17Q96AE7 1141 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 MYOCQ99972 504 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 EFHD1Q9BUP0 239 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 SLC4A5Q9BY07 1137 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 IRX2Q9BZI1 471 aaPredicted RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 INTS2Q9H0H0 1204 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 NMUR1Q9HB89 426 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 CSNK1G1Q9HCP0 422 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 SPASTQ9UBP0 616 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 PADI4Q9UM07 663 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 LRRK1Q38SD2 2015 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 WIPF3A6NGB9 483 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 LATS1O95835 1130 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 ANXA6P08133 673 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 ATICP31939 592 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 MC1RQ01726 317 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 GUCY1B3Q02153 619 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 TMEM119Q4V9L6 283 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 DCAF6Q58WW2 860 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 L1TD1Q5T7N2 865 aaKnown RBP9.5□□□□□ -0.89
USP28-205ENST00000537706 SCARA3Q6AZY7 606 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 NEK5Q6P3R8 708 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 ZNF720Q7Z2F6 126 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 TRAPPC11Q7Z392 1133 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 PARGQ86W56 976 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 TMEM145Q8NBT3 493 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 OR5B17Q8NGF7 314 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 CPT1CQ8TCG5 803 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 C8orf76Q96K31 380 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 FAM84AQ96KN4 292 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 SLC29A3Q9BZD2 475 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 CDH19Q9H159 772 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 PNPLA8Q9NP80 782 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 GGT7Q9UJ14 662 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 NME7Q9Y5B8 376 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 PCDHB13Q9Y5F0 798 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 MYH10P35580 1976 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 COL12A1Q99715 3063 aa9.5□□□□□ -0.89
USP28-205ENST00000537706 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.49□□□□□ -0.89
USP28-205ENST00000537706 D6RAR5 112 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 MKRN2OSH3BPM6 223 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 CLDN1O95832 211 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 CSF2P04141 144 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 NME1P15531 152 aaKnown RBP9.49□□□□□ -0.89
USP28-205ENST00000537706 TNNI1P19237 187 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 CSKP41240 450 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 ZNF542PQ5EBM4 170 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 MPP7Q5T2T1 576 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 PAQR9Q6ZVX9 377 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 CCDC186Q7Z3E2 898 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 MFN1Q8IWA4 741 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 FUKQ8N0W3 1084 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 ZMIZ2Q8NF64 920 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 SLC2A14Q8TDB8 520 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 SCG3Q8WXD2 468 aaKnown RBP9.49□□□□□ -0.89
USP28-205ENST00000537706 PTPRN2Q92932 1015 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 POM121Q96HA1 1249 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 FIZ1Q96SL8 496 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 FAM129BQ96TA1 746 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 BOCQ9BWV1 1114 aa9.49□□□□□ -0.89
USP28-205ENST00000537706 MRPL44Q9H9J2 332 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms