RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CCDC146Q8IYE0 955 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 PRSS3P2Q8NHM4 247 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 AKAP1Q92667 903 aaKnown RBP eCLIP3.97□□□□□ -1.77
USP48-215ENST00000534705 NUAK2Q9H093 628 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 CDCP1Q9H5V8 836 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 ARFGAP3Q9NP61 516 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 SLC39A10Q9ULF5 831 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 NFU1Q9UMS0 254 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 PCDHGB2Q9Y5G2 931 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 SHANK3Q9BYB0 1731 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 TNS1Q9HBL0 1735 aaKnown RBP3.97□□□□□ -1.77
USP48-215ENST00000534705 THSD7AQ9UPZ6 1657 aa3.97□□□□□ -1.77
USP48-215ENST00000534705 TNS3Q68CZ2 1445 aa3.96□□□□□ -1.77
USP48-215ENST00000534705 PARP4Q9UKK3 1724 aaKnown RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 INPPL1O15357 1258 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 SGPL1O95470 568 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 SLC3A2P08195 630 aaKnown RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 ITGA5P08648 1049 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 SRGAP2BP0DMP2 458 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 NPPBP16860 134 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 NDUFS1P28331 727 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 HOXD12P35452 270 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 BFSP2Q13515 415 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 KPNB1Q14974 876 aaKnown RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 FAM110CQ1W6H9 321 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 SLC2A7Q6PXP3 512 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 TOGARAM2Q6ZUX3 1019 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 CNGA4Q8IV77 575 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 LAS2Q8IYD9 372 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 ACRBPQ8NEB7 543 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 ASB12Q8WXK4 309 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 PRR11Q96HE9 360 aaPredicted RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 ZNF845Q96IR2 970 aaPredicted RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 SIGLEC11Q96RL6 698 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 EIF3CQ99613 913 aaKnown RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 SENP7Q9BQF6 1050 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 TTLL2Q9BWV7 592 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 UBA5Q9GZZ9 404 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 VPS16Q9H269 839 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 PRDM16Q9HAZ2 1276 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 ERVK-5Q9HDB9 667 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 FBXO28Q9NVF7 368 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 ARL8BQ9NVJ2 186 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 FNIP2Q9P278 1114 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 PCDHB2Q9Y5E7 798 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 SBNO1A3KN83 1393 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 POLR3AO14802 1390 aaPredicted RBP3.96□□□□□ -1.78
USP48-215ENST00000534705 CD163L1Q9NR16 1453 aa3.96□□□□□ -1.78
USP48-215ENST00000534705 NPHP3Q7Z494 1330 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SSH2Q76I76 1423 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SLIT3O75094 1523 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SLIT2O94813 1529 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 FAM208AQ9UK61 1670 aaKnown RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 BCL9LQ86UU0 1499 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 CDK12Q9NYV4 1490 aaPredicted RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 GOLGA6L3A6NEY3 463 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 CYSRT1A8MQ03 144 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 J3KTA2 159 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 PRYO14603 147 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 NPC1O15118 1278 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 ANXA6P08133 673 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 ABCB4P21439 1286 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 RPS6KB1P23443 525 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 YY1P25490 414 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SLC8A1P32418 973 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 PPM1AP35813 382 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 TECP42680 631 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SLC12A2P55011 1212 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 ID2Q02363 134 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 CBFBQ13951 182 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 SLC9C1Q4G0N8 1177 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 C10orf25Q5T742 122 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 MSANTD2Q6P1R3 559 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 MRPL10Q7Z7H8 261 aaKnown RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 SYTL1Q8IYJ3 562 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 C16orf52Q8NHV5 167 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 NSMCE1Q8WV22 266 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 RSC1A1Q92681 617 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 LRRC59Q96AG4 307 aaKnown RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 FAR2Q96K12 515 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 FCRL5Q96RD9 977 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 GATA5Q9BWX5 397 aaPredicted RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 TP63Q9H3D4 680 aaPredicted RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 FSCN3Q9NQT6 498 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 ATRNO75882 1429 aa3.95□□□□□ -1.78
USP48-215ENST00000534705 CENPJQ9HC77 1338 aaPredicted RBP3.95□□□□□ -1.78
USP48-215ENST00000534705 ROCK2O75116 1388 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 EIF3AQ14152 1382 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 ZMYM2Q9UBW7 1377 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 PNMA6EA0A0J9YXQ4 647 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 RRHO14718 337 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 TAF5LO75529 589 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 PLAUP00749 431 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 FGBP02675 491 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CD63P08962 238 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 CTSAP10619 480 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 ALDH18A1P54886 795 aaKnown RBP3.94□□□□□ -1.78
USP48-215ENST00000534705 YPEL5P62699 121 aa3.94□□□□□ -1.78
USP48-215ENST00000534705 DMWDQ09019 674 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms