RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TCP11L2Q8N4U5 519 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ZNF565Q8N9K5 539 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 TP53I13Q8NBR0 393 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 SLC4A11Q8NBS3 891 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 BHLHE22Q8NFJ8 381 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 IGDCC4Q8TDY8 1250 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 IPCEF1Q8WWN9 437 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 RAPGEF4Q8WZA2 1011 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ATP6V1E2Q96A05 226 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 C19orf60Q96EN9 201 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 PANX2Q96RD6 677 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 YME1L1Q96TA2 773 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CCDC106Q9BWC9 280 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 EDEM3Q9BZQ6 932 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 NT5C3AQ9H0P0 336 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 RAB17Q9H0T7 212 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 DPEP3Q9H4B8 488 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CCDC134Q9H6E4 229 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 DCLRE1BQ9H816 532 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 MMRN2Q9H8L6 949 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 KCNK13Q9HB14 408 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 PLCB1Q9NQ66 1216 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ACSS2Q9NR19 701 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ARHGAP20Q9P2F6 1191 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 CD300AQ9UGN4 299 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 ATP6V1HQ9UI12 483 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 EDARQ9UNE0 448 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 KLF2Q9Y5W3 355 aaPredicted RBP5.68□□□□□ -1.5
CD44-236ENST00000533222 USH1CQ9Y6N9 552 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 AFF2P51816 1311 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 WDR17Q8IZU2 1322 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 WDR62O43379 1518 aa5.68□□□□□ -1.5
CD44-236ENST00000533222 INO80Q9ULG1 1556 aaPredicted RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 PIK3C2GO75747 1445 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CROCC2H7BZ55 1655 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 A0A0G2JPF8 293 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 FUOMA2VDF0 154 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 VWA3AA6NCI4 1184 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 DBX1A6NMT0 343 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CAPN14A8MX76 684 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 HNRNPCL3B7ZW38 293 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ZNF701M0R085 212 aaPredicted RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 RFXAPO00287 272 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 VWA5AO00534 786 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 E2F3O00716 465 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ACOX3O15254 700 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 GPR39O43194 453 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 SLC7A4O43246 635 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ZBTB43O43298 467 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 HNRNPCL4P0DMR1 293 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ITGA2P17301 1181 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ITGAXP20702 1163 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CYP3A5P20815 502 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 GSTM2P28161 218 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 PTGS2P35354 604 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 VHLP40337 213 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 FNTBP49356 437 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ADCY7P51828 1080 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ARFIP2P53365 341 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 AP2S1P53680 142 aaPredicted RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 EPHB4P54760 987 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 AP1S2P56377 157 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 TSPAN5P62079 268 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 PSMC5P62195 406 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 VSNL1P62760 191 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ZNF33BQ06732 778 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ENPEPQ07075 957 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 LGALS3BPQ08380 585 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 RESTQ13127 1097 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 DHX34Q14147 1143 aaKnown RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 EZH2Q15910 746 aaKnown RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 STX1AQ16623 288 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 BROXQ5VW32 411 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 SLFN13Q68D06 897 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 KCTD16Q68DU8 428 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 KLHL35Q6PF15 583 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 C11orf88Q6PI97 169 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 PIK3AP1Q6ZUJ8 805 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CCDC149Q6ZUS6 474 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 C15orf52Q6ZUT6 534 aaKnown RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 PLEKHM3Q6ZWE6 761 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 TMTC3Q6ZXV5 915 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 PTF1AQ7RTS3 328 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 ZNF572Q7Z3I7 529 aaPredicted RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 GPR141Q7Z602 305 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 C1QL4Q86Z23 238 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CAMK1DQ8IU85 385 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 TBC1D21Q8IYX1 336 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 FAM9CQ8IZT9 166 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 NATD1Q8N6N6 113 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 MAGEB6Q8N7X4 407 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 PCYOX1LQ8NBM8 494 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 CLRN3Q8NCR9 226 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 GANCQ8TET4 914 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 AENQ8WTP8 325 aaKnown RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 NOC3LQ8WTT2 800 aaKnown RBP5.67□□□□□ -1.5
CD44-236ENST00000533222 CHPT1Q8WUD6 406 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 SEPT1Q8WYJ6 367 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 SLC5A5Q92911 643 aa5.67□□□□□ -1.5
CD44-236ENST00000533222 EDC3Q96F86 508 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms