RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 SEC24CP53992 1094 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 LOXL3P58215 753 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 DSTNP60981 165 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 NIPAL4Q0D2K0 466 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TMEM95Q3KNT9 176 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 SYCP2LQ5T4T6 812 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 HECTD2Q5U5R9 776 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TAF2Q6P1X5 1199 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 VWA1Q6PCB0 445 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TTC23LQ6PF05 361 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 APOA5Q6Q788 366 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 SKAP1Q86WV1 359 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 SNX32Q86XE0 403 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 SSH3Q8TE77 659 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 LRTOMTQ8WZ04 291 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TMEM125Q96AQ2 219 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 TBC1D20Q96BZ9 403 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 PTCD3Q96EY7 689 aaKnown RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 C11orf24Q96F05 449 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 NDNQ99608 321 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 PREBQ9HCU5 417 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 SLC40A1Q9NP59 571 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 ATAD3AQ9NVI7 634 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 ANO10Q9NW15 660 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 VPS18Q9P253 973 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 MTRF1LQ9UGC7 380 aaKnown RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 TESQ9UGI8 421 aaKnown RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 TBK1Q9UHD2 729 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 GRID1Q9ULK0 1009 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 FAM32AQ9Y421 112 aaKnown RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 RAD54BQ9Y620 910 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 EPN1Q9Y6I3 576 aaPredicted RBP5.89□□□□□ -1.47
CD44-231ENST00000531110 HFM1A2PYH4 1435 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 PLA2R1Q13018 1463 aa5.89□□□□□ -1.47
CD44-231ENST00000531110 A0A0B4J269 797 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 KANSL1LA0AUZ9 987 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 TRIM43BA6NCK2 446 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 GOLGA8KD6RF30 607 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 GOLGA8TH3BQL2 631 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 RAMP2O60895 175 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 BAG2O95816 211 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 GOLGA8HP0CJ92 632 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 SFPQP23246 707 aaKnown RBP eCLIP5.88□□□□□ -1.47
CD44-231ENST00000531110 PPIFP30405 207 aaKnown RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 TRAPPC10P48553 1259 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 NXPH1P58417 271 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 S100A12P80511 92 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 MC2RQ01718 297 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DNAJC3Q13217 504 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 TUBB3Q13509 450 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 GALEQ14376 348 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 ARL13BQ3SXY8 428 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 CCNJQ5T5M9 372 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 RNASEH2BQ5TBB1 312 aaKnown RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 ZNF658Q5TYW1 1059 aaPredicted RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 RNF220Q5VTB9 566 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DENND2CQ68D51 928 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 LMBRD2Q68DH5 695 aaPredicted RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 FAM171BQ6P995 826 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DSTYKQ6XUX3 929 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 Q6ZNX1 250 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 MCM10Q7L590 875 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 SLC51BQ86UW2 128 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 VRK3Q8IV63 474 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 CROCCP3Q8IVE0 287 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 FAM156AQ8NDB6 213 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 FAM46DQ8NEK8 389 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 NSMCE1Q8WV22 266 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 TMA16Q96EY4 203 aaKnown RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 APIPQ96GX9 242 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 PGBD1Q96JS3 809 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 CCDC42Q96M95 316 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 Q96MF0 132 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 NT5C1BQ96P26 610 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 MTMR9Q96QG7 549 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 RIOK1Q9BRS2 568 aaKnown RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 ZNF518BQ9C0D4 1074 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 KLHL4Q9C0H6 718 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 YIPF3Q9GZM5 350 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DRC3Q9H069 523 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 BTBD1Q9H0C5 482 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 C8orf33Q9H7E9 229 aaPredicted RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 KIF17Q9P2E2 1029 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 LARSQ9P2J5 1176 aaKnown RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.88□□□□□ -1.47
CD44-231ENST00000531110 FGD5Q6ZNL6 1462 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 SHANK2Q9UPX8 1470 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DISP1Q96F81 1524 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 DNMBPQ6XZF7 1577 aa5.88□□□□□ -1.47
CD44-231ENST00000531110 SYNJ2BP-COX16A0A087WUM0 186 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 KIF28PB7ZC32 967 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 H3BQF6 201 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 MPPED1O15442 326 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 LDHAP00338 332 aaKnown RBP5.87□□□□□ -1.47
CD44-231ENST00000531110 KRT6AP02538 564 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 KRT6BP04259 564 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 CCDC192P0DO97 292 aa5.87□□□□□ -1.47
CD44-231ENST00000531110 GYS1P13807 737 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms