RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 A0A1W2PPM1 405 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 SLC12A8A0AV02 714 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 SDR42E2A6NKP2 422 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 MAFKO60675 156 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 AP2A1O95782 977 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 JCHAINP01591 159 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 RING1Q06587 406 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 CMTR2Q8IYT2 770 aaKnown RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 ZNF276Q8N554 614 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 CNTD1Q8N815 330 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 ZNF317Q96PQ6 595 aaPredicted RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 PRMT1Q99873 361 aaKnown RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 TRIM56Q9BRZ2 755 aaKnown RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 HERC2P3Q9BVR0 1158 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 KIF9Q9HAQ2 790 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 FNIP2Q9P278 1114 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 MAGED2Q9UNF1 606 aaPredicted RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 PCDHA11Q9Y5I1 949 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 MRPL42Q9Y6G3 142 aaKnown RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 IGLV3-10A0A075B6K4 115 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 CACNG3O60359 315 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 STEAP4Q687X5 459 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 ITPRIPL1Q6GPH6 555 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 CYS1Q717R9 158 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 GSDMBQ8TAX9 411 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 ZNF473Q8WTR7 871 aaKnown RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 ARNTL2Q8WYA1 636 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 STAMBPL1Q96FJ0 436 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 MLPHQ9BV36 600 aaPredicted RBP21.2■□□□□ 0.98
VPS28-209ENST00000528142 VANGL2Q9ULK5 521 aa21.2■□□□□ 0.98
VPS28-209ENST00000528142 ERI2A8K979 691 aaKnown RBP21.19■□□□□ 0.98
VPS28-209ENST00000528142 PRPF4O43172 522 aaKnown RBP eCLIP21.19■□□□□ 0.98
VPS28-209ENST00000528142 TLR5O60602 858 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 RHOQP17081 205 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 NFKB1P19838 968 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 SLC18A1P54219 525 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 BTG3Q14201 252 aaPredicted RBP21.19■□□□□ 0.98
VPS28-209ENST00000528142 SPARCL1Q14515 664 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 SNX30Q5VWJ9 437 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 KLHDC8BQ8IXV7 354 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 ATPAF2Q8N5M1 289 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 ANKRD42Q8N9B4 389 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 CHMP6Q96FZ7 201 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 TMEM169Q96HH4 297 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 NOL6Q9H6R4 1146 aaKnown RBP21.19■□□□□ 0.98
VPS28-209ENST00000528142 SMYD2Q9NRG4 433 aa21.19■□□□□ 0.98
VPS28-209ENST00000528142 GREB1Q4ZG55 1949 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 CXorf49A8MYA2 514 aaPredicted RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 EFCAB14O75071 495 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 ACRP10323 421 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 CCNB1P14635 433 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 HMGA1P17096 107 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 LAG3P18627 525 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 MGAT1P26572 445 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 CCT5P48643 541 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 SESN2P58004 480 aaPredicted RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 LRRC14Q15048 493 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 TPGS2Q68CL5 300 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 C16orf59Q7L2K0 433 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 LRRC49Q8IUZ0 686 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 UMODL1-AS1Q8N2C9 162 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 MGARPQ8TDB4 240 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 DENND1AQ8TEH3 1009 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 OVCA2Q8WZ82 227 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 IL12RB2Q99665 862 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 ZYG11BQ9C0D3 744 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 MOCS1Q9NZB8 636 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 FAM47DPA6NHR8 397 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 ARHGAP42A6NI28 874 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 FAM159BA6NKW6 160 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 MATN3O15232 486 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 RAG1P15918 1043 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 KPNA1P52294 538 aaPredicted RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 NUGGCQ68CJ6 796 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 FBXL22Q6P050 247 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 TRMT10BQ6PF06 316 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 DDX53Q86TM3 631 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 SLC26A11Q86WA9 606 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 CCNJLQ8IV13 435 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 ZNF419Q96HQ0 510 aaPredicted RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 SMC6Q96SB8 1091 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 SSU72Q9NP77 194 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 CASS4Q9NQ75 786 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 TMEM248Q9NWD8 314 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 PIH1D1Q9NWS0 290 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 SPG21Q9NZD8 308 aa21.18■□□□□ 0.98
VPS28-209ENST00000528142 SMG5Q9UPR3 1016 aaKnown RBP21.18■□□□□ 0.98
VPS28-209ENST00000528142 DRGXA6NNA5 263 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 TYROBPO43914 113 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 ALDH1A2O94788 518 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 HMBSP08397 361 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 DRD4P21917 467 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 IFNAR2P48551 515 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 PAPOLAP51003 745 aaKnown RBP21.17■□□□□ 0.98
VPS28-209ENST00000528142 CRADDP78560 199 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 OLIG2Q13516 323 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 ALFQ53S48 1182 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 ACBD5Q5T8D3 534 aaPredicted RBP21.17■□□□□ 0.98
VPS28-209ENST00000528142 LRRC6Q86X45 466 aa21.17■□□□□ 0.98
VPS28-209ENST00000528142 C4orf33Q8N1A6 199 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms