RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 DEUP1Q05D60 604 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 CDH18Q13634 790 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 WDR59Q6PJI9 974 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 C11orf74Q86VG3 221 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SYT12Q8IV01 421 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 OR2I1PQ8NGU4 316 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 DNASE2BQ8WZ79 361 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SPACA7Q96KW9 195 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 HSPA12BQ96MM6 686 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SPAG5Q96R06 1193 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 AGPAT1Q99943 283 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 GPR174Q9BXC1 333 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 RSPH9Q9H1X1 276 aaPredicted RBP10.98□□□□□ -0.65
CD44-227ENST00000528086 PDCL3Q9H2J4 239 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 C6orf106Q9H6K1 298 aaPredicted RBP10.98□□□□□ -0.65
CD44-227ENST00000528086 WDCPQ9H6R7 721 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 SYNCQ9H7C4 482 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 NDFIP2Q9NV92 336 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 RRN3Q9NYV6 651 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 EVLQ9UI08 416 aaPredicted RBP10.98□□□□□ -0.65
CD44-227ENST00000528086 CDV3Q9UKY7 258 aaKnown RBP10.98□□□□□ -0.65
CD44-227ENST00000528086 CEP83Q9Y592 693 aa10.98□□□□□ -0.65
CD44-227ENST00000528086 LRRC53A6NM62 1247 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 C4orf47A7E2U8 309 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 H0Y626 953 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 GIPC1O14908 333 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 MAP3K13O43283 966 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 SYNCRIPO60506 623 aaKnown RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 ZNF821O75541 412 aaPredicted RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 ZMPSTE24O75844 475 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 CD160O95971 181 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ATP5BP06576 529 aaKnown RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 ABCB4P21439 1286 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 GLDCP23378 1020 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ECT2LQ008S8 904 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 STARD3Q14849 445 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 AASDHQ4L235 1098 aaPredicted RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 TRIM61Q5EBN2 209 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 BRMS1LQ5PSV4 323 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 LYSMD4Q5XG99 296 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 SLC23A3Q6PIS1 610 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 SLC36A4Q6YBV0 504 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 TRIM72Q6ZMU5 477 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ERMP1Q7Z2K6 904 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 DGLUCYQ7Z3D6 616 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ZNF571Q7Z3V5 609 aaPredicted RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 FAM124AQ86V42 546 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 STK40Q8N2I9 435 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 AADATQ8N5Z0 425 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ARFGAP1Q8N6T3 406 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 CCDC185Q8N715 623 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 KDM1BQ8NB78 822 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 RNF34Q969K3 372 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 C1orf74Q96LT6 269 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 RPRD1AQ96P16 312 aaPredicted RBP10.97□□□□□ -0.65
CD44-227ENST00000528086 RTKNQ9BST9 563 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 EDEM2Q9BV94 578 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 TRIM7Q9C029 511 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 EBF2Q9HAK2 575 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ADAM22Q9P0K1 906 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 SARDHQ9UL12 918 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 PLA2G4CQ9UP65 541 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 ACTL7AQ9Y615 435 aa10.97□□□□□ -0.65
CD44-227ENST00000528086 A0A1W2PQC6 194 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 SIGLEC16A6NMB1 481 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 METTL12A8MUP2 240 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 E9PAM4 449 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 K7ERQ8 282 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 PLK4O00444 970 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 DDX3XO00571 662 aaKnown RBP eCLIP10.96□□□□□ -0.65
CD44-227ENST00000528086 AP5Z1O43299 807 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 SMAD6O43541 496 aaKnown RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 GJB3O75712 270 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 ASLP04424 464 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 SRPRAP08240 638 aaKnown RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 ENGP17813 658 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 RRM1P23921 792 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 RDXP35241 583 aaKnown RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 ADRA1BP35368 520 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 PTPN9P43378 593 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 VASPP50552 380 aaPredicted RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 CDH4P55283 916 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 SNX16P57768 344 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 ZNF252P-AS1Q0IIN9 211 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 BYSLQ13895 437 aaKnown RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 ZSCAN23Q3MJ62 389 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 HGSNATQ68CP4 663 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 NLRP14Q86W24 1093 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 MCOLN2Q8IZK6 566 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 PYROXD2Q8N2H3 581 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 OR7D4Q8NG98 312 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 PRCCQ92733 491 aaPredicted RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 FAM131CQ96AQ9 280 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 PCMTD1Q96MG8 357 aaPredicted RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 HAPLN3Q96S86 360 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 NOL6Q9H6R4 1146 aaKnown RBP10.96□□□□□ -0.65
CD44-227ENST00000528086 AIPL1Q9NZN9 384 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 SLC12A6Q9UHW9 1150 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 STAP1Q9ULZ2 295 aa10.96□□□□□ -0.65
CD44-227ENST00000528086 FRYQ5TBA9 3013 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms