RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SLC22A11	Q9NSA0	550 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	BAG5	Q9UL15	447 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	COG5	Q9UP83	839 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553		A0A1W2PPC1	479 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	hCG_1642624	A0A1W2PR95	340 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	FAM90A10P	A6NDY2	464 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	CXorf65	A6NEN9	183 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	FAM90A20P	A6NIJ5	464 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	GRM8	O00222	908 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	IPO5	O00410	1097 aa	Known RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	MSI1	O43347	362 aa	Known RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	NEURL1	O76050	574 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	NDUFB8	O95169	186 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	OAZ2	O95190	189 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	LDHA	P00338	332 aa	Known RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	CYP21A2	P08686	494 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	CHKA	P35790	457 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	RHAG	Q02094	409 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	FAM83B	Q5T0W9	1011 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	ASPHD1	Q5U4P2	390 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	JMJD6	Q6NYC1	403 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	KIAA1324	Q6UXG2	1013 aa	Known RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	RFX8	Q6ZV50	586 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	TRAPPC11	Q7Z392	1133 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	ANKS1B	Q7Z6G8	1248 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	KLB	Q86Z14	1044 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	PTGR2	Q8N8N7	351 aa	Predicted RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	OR6Y1	Q8NGX8	325 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	AAMDC	Q9H7C9	122 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	G6PC2	Q9NQR9	355 aa		5.18	□□□□□ -1.58
CD44-223	ENST00000526553	SRP68	Q9UHB9	627 aa	Known RBP	5.18	□□□□□ -1.58
CD44-223	ENST00000526553	HMX3	A6NHT5	357 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553		A6NNC1	897 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	ZC3H11A	O75152	810 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TFRC	P02786	760 aa	Known RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	HOXB9	P17482	250 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	SCP2	P22307	547 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	PRPH2	P23942	346 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TBXAS1	P24557	533 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	POLG	P54098	1239 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	OAZ1	P54368	228 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	CDK18	Q07002	472 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	SEMA3A	Q14563	771 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	SMAD1	Q15797	465 aa	Known RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	ARL13A	Q5H913	290 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	RRAGA	Q7L523	313 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	KDELC2	Q7Z4H8	507 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TMEM200A	Q86VY9	491 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	C9orf106	Q8NAJ2	232 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	FAM110D	Q8TAY7	271 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-223	ENST00000526553	THAP4	Q8WY91	577 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	IP6K1	Q92551	441 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	ARRDC3	Q96B67	414 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	SDCCAG3	Q96C92	435 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TASP1	Q9H6P5	420 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	SAYSD1	Q9NPB0	183 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	FZD3	Q9NPG1	666 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	RCE1	Q9Y256	329 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TTC3	P53804	2025 aa		5.17	□□□□□ -1.58
CD44-223	ENST00000526553	TMEM272	A0A1B0GTI8	110 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553		B4DGG1	531 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553		H3BNX3	289 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	FAM155B	O75949	473 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	NTN1	O95631	604 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	SYF2	O95926	243 aa	Known RBP	5.16	□□□□□ -1.58
CD44-223	ENST00000526553	CHRNB1	P11230	501 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	CHRNA5	P30532	468 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	GRK6	P43250	576 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	TRAPPC10	P48553	1259 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	VWA5B1	Q5TIE3	1220 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	SLC30A9	Q6PML9	568 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	GALNT15	Q8N3T1	639 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	MYCT1	Q8N699	235 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	NSMCE1	Q8WV22	266 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	SLC25A28	Q96A46	364 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	PAGR1	Q9BTK6	254 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	ARHGAP39	Q9C0H5	1083 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	FAM234A	Q9H0X4	552 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	TAF1D	Q9H5J8	278 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-223	ENST00000526553	SEPSECS	Q9HD40	501 aa	Known RBP	5.16	□□□□□ -1.58
CD44-223	ENST00000526553	RNF146	Q9NTX7	359 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	ARL15	Q9NXU5	204 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	KCND3	Q9UK17	655 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	FBXO4	Q9UKT5	387 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	SQOR	Q9Y6N5	450 aa		5.16	□□□□□ -1.58
CD44-223	ENST00000526553	NPIPB13	A6NJU9	1138 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	NPIPB5	A8MRT5	1133 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	NPIPB4	C9JG80	1138 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	IFRD1	O00458	451 aa	Predicted RBP	5.15	□□□□□ -1.59
CD44-223	ENST00000526553	TCEA3	O75764	348 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	IFNA2	P01563	188 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	PKM	P14618	531 aa	Known RBP	5.15	□□□□□ -1.59
CD44-223	ENST00000526553	CHN1	P15882	459 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	PRKAA2	P54646	552 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	GAD2	Q05329	585 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	ZBTB16	Q05516	673 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	PMPCA	Q10713	525 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	ALKBH1	Q13686	389 aa	Known RBP	5.15	□□□□□ -1.59
CD44-223	ENST00000526553	PRKG1	Q13976	671 aa		5.15	□□□□□ -1.59
CD44-223	ENST00000526553	TIGD6	Q17RP2	521 aa		5.15	□□□□□ -1.59

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