RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ACSM6Q6P461 480 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 Q6ZWC4 215 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 ENOSF1Q7L5Y1 443 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 SYT13Q7L8C5 426 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 ZNF551Q7Z340 670 aaPredicted RBP5.16□□□□□ -1.58
CD44-220ENST00000525688 KRT27Q7Z3Y8 459 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 TEX11Q8IYF3 940 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 CEP70Q8NHQ1 597 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 GLMPQ8WWB7 406 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 NPIPB3Q92617 1050 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 HTRA1Q92743 480 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 KTI12Q96EK9 354 aaPredicted RBP5.16□□□□□ -1.58
CD44-220ENST00000525688 COQ10AQ96MF6 247 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MLST8Q9BVC4 326 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 ARHGEF3Q9NR81 526 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 SLC2A4RGQ9NR83 387 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 PDRG1Q9NUG6 133 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 DCAF16Q9NXF7 216 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 MGAT4CQ9UBM8 478 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 AMFRQ9UKV5 643 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 RABL2BQ9UNT1 228 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 GPR34Q9UPC5 381 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 DNAJC16Q9Y2G8 782 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 PCDHB7Q9Y5E2 793 aa5.16□□□□□ -1.58
CD44-220ENST00000525688 CFAP65Q6ZU64 1925 aaKnown RBP5.15□□□□□ -1.58
CD44-220ENST00000525688 CCDC187A0A096LP49 1063 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 F5H0A9 414 aaPredicted RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 SEPT4O43236 478 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DNTTP04053 509 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 CYP3A4P08684 503 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 MYCLP12524 364 aaPredicted RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 MUTP22033 750 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 THBS4P35443 961 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 TUBP50607 506 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 RBM5P52756 815 aaKnown RBP eCLIP5.15□□□□□ -1.59
CD44-220ENST00000525688 PDE1AP54750 535 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 RPL15P61313 204 aaKnown RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 TAP1Q03518 808 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 TLE3Q04726 772 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DEUP1Q05D60 604 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 FOXE3Q13461 319 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 BFSP2Q13515 415 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 ANKRD1Q15327 319 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DLGAP5Q15398 846 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 TBC1D25Q3MII6 688 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 CTXN3Q4LDR2 81 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 FNDC7Q5VTL7 733 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 FAM205BPQ63HN1 556 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 KAZNQ674X7 775 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DENND2CQ68D51 928 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 ANKRD16Q6P6B7 361 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 Q6ZNX1 250 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DPY19L3Q6ZPD9 716 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 CCDC73Q6ZRK6 1079 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 CATSPER4Q7RTX7 472 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 ARHGEF25Q86VW2 580 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 SAMD14Q8IZD0 417 aaPredicted RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 TSPYL6Q8N831 410 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 MSANTD4Q8NCY6 345 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 NPAS1Q99742 590 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 REEP2Q9BRK0 252 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 THAP7Q9BT49 309 aaPredicted RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 DUSP22Q9NRW4 184 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 SYBUQ9NX95 663 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 DLL3Q9NYJ7 618 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 BAG5Q9UL15 447 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 RRP7AQ9Y3A4 280 aaKnown RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 E9PCH4 1651 aa5.15□□□□□ -1.59
CD44-220ENST00000525688 KDM5AP29375 1690 aaKnown RBP5.15□□□□□ -1.59
CD44-220ENST00000525688 UBR1Q8IWV7 1749 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 MED14O60244 1454 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 ARHGAP23Q9P227 1491 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 SLIT1O75093 1534 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 NEURL4Q96JN8 1562 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 CCDC151A5D8V7 595 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 A6NLC8 198 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 M0QYT0 321 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 AP4M1O00189 453 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 P4HA2O15460 535 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 CA12O43570 354 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 AHCYL1O43865 530 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 TSPAN3O60637 253 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 TBX18O95935 607 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 HKR1P10072 659 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 NR2F6P10588 404 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 AKR1B1P15121 316 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 ZNF37AP17032 561 aaPredicted RBP5.14□□□□□ -1.59
CD44-220ENST00000525688 MATN1P21941 496 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 ITPKBP27987 946 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 FAM3BP58499 235 aaPredicted RBP5.14□□□□□ -1.59
CD44-220ENST00000525688 DCAF7P61962 342 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 DGCR2P98153 550 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.14□□□□□ -1.59
CD44-220ENST00000525688 MAPK7Q13164 816 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 CBFBQ13951 182 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 SPATS1Q496A3 300 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 CFAP58Q5T655 872 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 C16orf89Q6UX73 402 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 P3H2Q8IVL5 708 aa5.14□□□□□ -1.59
CD44-220ENST00000525688 SFTPA1Q8IWL2 248 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms