RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PRPH2P23942 346 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 CDK7P50613 346 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 RHAGQ02094 409 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 TUBB8Q3ZCM7 444 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 TTC39AQ5SRH9 613 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 C10orf76Q5T2E6 689 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 C1orf228Q6PIY5 440 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 BHLHA9Q7RTU4 235 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 KDELC2Q7Z4H8 507 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 CACNA2D3Q8IZS8 1091 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 MAGEH1Q9H213 219 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 FZD3Q9NPG1 666 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 PLCB1Q9NQ66 1216 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 LIN7CQ9NUP9 197 aaKnown RBP4.45□□□□□ -1.7
CD44-217ENST00000525348 DTX4Q9Y2E6 619 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 GRM8O00222 908 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 SMAD6O43541 496 aaKnown RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 ZC3H11AO75152 810 aaKnown RBP eCLIP4.44□□□□□ -1.7
CD44-217ENST00000525348 CSTBP04080 98 aaKnown RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 LYL1P12980 280 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 ARRB2P32121 409 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 AP2B1P63010 937 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 ICA1Q05084 483 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 PMPCAQ10713 525 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 HDAC1Q13547 482 aaPredicted RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 GALNT3Q14435 633 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 SEMA3AQ14563 771 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 ATPAF1Q5TC12 328 aaPredicted RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 DAB2IPQ5VWQ8 1189 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 SLC30A9Q6PML9 568 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 RRAGAQ7L523 313 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 TMEM200AQ86VY9 491 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 VPS37AQ8NEZ2 397 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 B4GALNT2Q8NHY0 566 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 SLC2A12Q8TD20 617 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 MARK4Q96L34 752 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 ELAC1Q9H777 363 aaKnown RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 SLC22A11Q9NSA0 550 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 ARL15Q9NXU5 204 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 DACT1Q9NYF0 836 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 BCCIPQ9P287 314 aaKnown RBP eCLIP4.44□□□□□ -1.7
CD44-217ENST00000525348 GRHPRQ9UBQ7 328 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 C19orf53Q9UNZ5 99 aaPredicted RBP4.44□□□□□ -1.7
CD44-217ENST00000525348 TNFSF13BQ9Y275 285 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 EVPLQ92817 2033 aa4.44□□□□□ -1.7
CD44-217ENST00000525348 TCRBV7S3A2A0A539 114 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 FAM90A20PA6NIJ5 464 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 NPIPB13A6NJU9 1138 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 NPIPB5A8MRT5 1133 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 NPIPB4C9JG80 1138 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 F5H423 210 aaPredicted RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 MDM4O15151 490 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 VEGFAP15692 232 aaPredicted RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 LRRC24Q50LG9 513 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 KLHL17Q6TDP4 642 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 NOL8Q76FK4 1167 aaKnown RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 RAB11FIP2Q7L804 512 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 TRAPPC11Q7Z392 1133 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 RNF144BQ7Z419 303 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 CENPIQ92674 756 aaPredicted RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 ZNF419Q96HQ0 510 aaPredicted RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 KRTAP1-5Q9BYS1 174 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 BRD8Q9H0E9 1235 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 PDE11AQ9HCR9 933 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 SIRT3Q9NTG7 399 aaPredicted RBP4.43□□□□□ -1.7
CD44-217ENST00000525348 KCND3Q9UK17 655 aa4.43□□□□□ -1.7
CD44-217ENST00000525348 IGKV2D-30A0A075B6S6 120 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 TRBV5-7A0A0A0MS05 114 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 EFCAB8A8MWE9 144 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 TNFRSF13BO14836 293 aaPredicted RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 TBXAS1P24557 533 aaPredicted RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 SERPINA4P29622 427 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 CCKARP32238 428 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 CDK18Q07002 472 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 PKP1Q13835 747 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 DCTN1Q14203 1278 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 TBRG1Q3YBR2 411 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 TANGO2Q6ICL3 276 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 ERAP2Q6P179 960 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 MTFR2Q6P444 385 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 MEPCEQ7L2J0 689 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 RASGRP2Q7LDG7 609 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 ANKS1BQ7Z6G8 1248 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 CTU1Q7Z7A3 348 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 KLBQ86Z14 1044 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 ENDOVQ8N8Q3 282 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 KDM1BQ8NB78 822 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 OTUD7AQ8TE49 926 aaPredicted RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 URB1-AS1Q96HZ7 61 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 MPHOSPH6Q99547 160 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 DDX23Q9BUQ8 820 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 MRPL44Q9H9J2 332 aaKnown RBP4.42□□□□□ -1.7
CD44-217ENST00000525348 Q9N2J8 555 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 TMEM248Q9NWD8 314 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 ZNF580Q9UK33 172 aa4.42□□□□□ -1.7
CD44-217ENST00000525348 FAM90A8PA6NJQ4 464 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 H0Y3Z8 333 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 FAM90A13PP0C7W8 464 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 FAM90A24PP0C7X0 464 aa4.41□□□□□ -1.7
CD44-217ENST00000525348 TYK2P29597 1187 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms