RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 KYAT3Q6YP21 454 aaKnown RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NET1Q7Z628 596 aaPredicted RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 CCNJLQ8IV13 435 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NUDCD3Q8IVD9 361 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 SUSD3Q96L08 255 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 UROC1Q96N76 676 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 C1orf21Q9H246 121 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 ANLNQ9NQW6 1124 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 CNGB3Q9NQW8 809 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 TBC1D13Q9NVG8 400 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 STAP1Q9ULZ2 295 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 PHF24Q9UPV7 400 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 PRG3Q9Y2Y8 225 aaPredicted RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NR2E3Q9Y5X4 410 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 KIAA0100Q14667 2235 aaKnown RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 CIB2O75838 187 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 FBXO21O94952 628 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 EOMESO95936 686 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 AMPD1P23109 780 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 ABL2P42684 1182 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 TMPRSS15P98073 1019 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 YWHAHQ04917 246 aaPredicted RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 DEUP1Q05D60 604 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 DSC1Q08554 894 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 AP1B1Q10567 949 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NAB1Q13506 487 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 GPNMBQ14956 572 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 TRMT5Q32P41 509 aaKnown RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NOMO2Q5JPE7 1267 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 SNX30Q5VWJ9 437 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 NCBP2-AS2Q69YL0 99 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 ANO7Q6IWH7 933 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 SCAMP5Q8TAC9 235 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 CFAP36Q96G28 342 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 EBNA1BP2Q99848 306 aaKnown RBP11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 UNC93B1Q9H1C4 597 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 THAP1Q9NVV9 213 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 DTLQ9NZJ0 730 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 TAGLN3Q9UI15 199 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 DSEQ9UL01 958 aa11.3□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM159BA6NKW6 160 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 CAPN14A8MX76 684 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 SPECC1L-ADORA2AF8WAN1 911 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 H0Y3Z8 333 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 PPP1R12AO14974 1030 aaPredicted RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 CREB3O43889 395 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 RFPL1O75677 317 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 LTFP02788 710 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 MLNP12872 115 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 CCL5P13501 91 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 SELPP16109 830 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 MAGEA3P43357 314 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 OR1G1P47890 313 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM189BP81408 668 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 RCN1Q15293 331 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 FAXCQ5TGI0 409 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 TRIM68Q6AZZ1 485 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 RINLQ6ZS11 566 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 CAND1Q86VP6 1230 aaKnown RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM126BQ8IXS8 530 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 COLGALT2Q8IYK4 626 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 KIRREL3Q8IZU9 778 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 PDCD7Q8N8D1 485 aaKnown RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 DBF4BQ8NFT6 615 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 WDR6Q9NNW5 1121 aaKnown RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 ALG13Q9NP73 1137 aaKnown RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 DMAP1Q9NPF5 467 aaPredicted RBP11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 ARHGEF4Q9NR80 690 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 HCSTQ9UBK5 93 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 PCDHA11Q9Y5I1 949 aa11.29□□□□□ -0.6
SH3RF1-203ENST00000508685 ZNF638Q14966 1978 aaKnown RBP11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM237BA0A1B0GVD1 139 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 B2RBV5 119 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM72CH0Y354 149 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 MAP3K7O43318 606 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 SNNO75324 88 aaPredicted RBP11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 BPGMP07738 259 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 SERPINA6P08185 405 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 ARL4AP40617 200 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 GATMP50440 423 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 BST1Q10588 318 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 IFRD2Q12894 506 aaPredicted RBP11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 GSTA3Q16772 222 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 ACSBG2Q5FVE4 666 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM72AQ5TYM5 149 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM72DQ6L9T8 149 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 KCNT2Q6UVM3 1135 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 LRRC74BQ6ZQY2 392 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FAM72BQ86X60 149 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 STKLD1Q8NE28 680 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 RNF139Q8WU17 664 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 ATP2A3Q93084 1043 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FERMT1Q9BQL6 677 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 RNF208Q9H0X6 261 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 FBXO6Q9NRD1 293 aaPredicted RBP11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 NMRK1Q9NWW6 199 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 DDIT4Q9NX09 232 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 TET1Q8NFU7 2136 aa11.28□□□□□ -0.6
SH3RF1-203ENST00000508685 NLRC5Q86WI3 1866 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms