RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SKA1Q96BD8 255 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 RRP36Q96EU6 259 aaKnown RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 RNFT2Q96EX2 444 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 FCRL5Q96RD9 977 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF347Q96SE7 839 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 CD180Q99467 661 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 TM2D2Q9BX73 214 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 CTDSP1Q9GZU7 261 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PAIP1Q9H074 479 aaKnown RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PREBQ9HCU5 417 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 TXNRD2Q9NNW7 524 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 HSF4Q9ULV5 492 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 DTX4Q9Y2E6 619 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PKP3Q9Y446 797 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 INPPL1O15357 1258 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 TULP3O75386 442 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 MBD4O95243 580 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 NUDT3O95989 172 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 PLAUP00749 431 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLPIP03973 132 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ST6GAL1P15907 406 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 SOX2P48431 317 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 MAPRE1Q15691 268 aaKnown RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 GPR68Q15743 365 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 BAK1Q16611 211 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 C10orf76Q5T2E6 689 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC9C2Q5TAH2 1124 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ACAD10Q6JQN1 1059 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC30A9Q6PML9 568 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 RTL10Q7L3V2 364 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 RSRC2Q7L4I2 434 aaKnown RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 C8orf58Q8NAV2 365 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 SEMA6DQ8NFY4 1073 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 OR52N4Q8NGI2 321 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 OSR1Q8TAX0 266 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM110DQ8TAY7 271 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 NCSTNQ92542 709 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 NELL1Q92832 810 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 APOPT1Q96IL0 206 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ADAD1Q96M93 576 aaKnown RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 C5orf34Q96MH7 638 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 PHF7Q9BWX1 381 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 NPLQ9BXD5 320 aaPredicted RBP4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ACAD9Q9H845 621 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 IL21RQ9HBE5 538 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ARL15Q9NXU5 204 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 ALKBH4Q9NXW9 302 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 TNFSF13BQ9Y275 285 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 CYP46A1Q9Y6A2 500 aa4.45□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM90A7PA6NKC0 464 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM90A22PA8MWA6 464 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM90A12PA8MX19 464 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM90A23PA8MXZ1 464 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 CD4P01730 458 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 CD63P08962 238 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 BMP5P22003 454 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 RPS6KB1P23443 525 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 HOXA7P31268 230 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 HNF1BP35680 557 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 GPD2P43304 727 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 YPEL5P62699 121 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 RPP30P78346 268 aaKnown RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 GALNT2Q10471 571 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 BYSLQ13895 437 aaKnown RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 CAMK1Q14012 370 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 SEMA3AQ14563 771 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAAH2Q6GMR7 532 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 RNF144BQ7Z419 303 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 KLBQ86Z14 1044 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 PAQR4Q8N4S7 273 aaPredicted RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 LSM14AQ8ND56 463 aaKnown RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 C2CD4CQ8TF44 421 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 HASPINQ8TF76 798 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZFPM2Q8WW38 1151 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 MAP4K1Q92918 833 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZUFSPQ96AP4 578 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZBTB10Q96DT7 871 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 RNF125Q96EQ8 232 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 FUZQ9BT04 418 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 TMPRSS5Q9H3S3 457 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 PRDM13Q9H4Q3 707 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 MROH8Q9H579 483 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 MLXIPLQ9NP71 852 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 IRAK4Q9NWZ3 460 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 IPO11Q9UI26 975 aaKnown RBP4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC8A2Q9UPR5 921 aa4.44□□□□□ -1.7
HMGB1P28-201ENST00000507778 LINC01548A6NM66 108 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 B4E171 279 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 KCNJ18B7U540 433 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 AKAP8O43823 692 aaKnown RBP4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 HLA-DQA2P01906 255 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 PRKCGP05129 697 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 TFEBP19484 476 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 TYK2P29597 1187 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 TSPAN7P41732 249 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 STAT1P42224 750 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 PAFAH1B1P43034 410 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 SLC12A2P55011 1212 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 CASP6P55212 293 aa4.43□□□□□ -1.7
HMGB1P28-201ENST00000507778 HSF1Q00613 529 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms