RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 INTS2Q9H0H0 1204 aaKnown RBP8.33□□□□□ -1.08
SCN1A-207ENST00000507401 CD248Q9HCU0 757 aa8.33□□□□□ -1.08
SCN1A-207ENST00000507401 BATF3Q9NR55 127 aa8.33□□□□□ -1.08
SCN1A-207ENST00000507401 ABCA7Q8IZY2 2146 aa8.33□□□□□ -1.08
SCN1A-207ENST00000507401 THADAQ6YHU6 1953 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 GOLGA6L7A0A1B0GV03 622 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 TCRBV21S2A2A0A5A6 115 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 H3BQF6 201 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 M0QYV0 167 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 ERVH48-1M5A8F1 160 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 TM4SF5O14894 197 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 IRAK2O43187 625 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 OPA1O60313 960 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 SEC31AO94979 1220 aaKnown RBP8.32□□□□□ -1.08
SCN1A-207ENST00000507401 IGLV3-27P01718 113 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 LTFP02788 710 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 HMBSP08397 361 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 HOXB2P14652 356 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 GABRG2P18507 467 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 SLC8A1P32418 973 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 HOXD12P35452 270 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 CREB5Q02930 508 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 TRIM14Q14142 442 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 EGFLAMQ63HQ2 1017 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 NUGGCQ68CJ6 796 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 SLC36A4Q6YBV0 504 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 FAM114A1Q8IWE2 563 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 GPATCH11Q8N954 259 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 ZNF557Q8N988 423 aaPredicted RBP8.32□□□□□ -1.08
SCN1A-207ENST00000507401 HMGB4Q8WW32 186 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 EDEM1Q92611 657 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 P2RY11Q96G91 374 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 ACOX2Q99424 681 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 CRACR2AQ9BSW2 395 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 TPSD1Q9BZJ3 242 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 THAP9Q9H5L6 903 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 ELOVL2Q9NXB9 296 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 PLK2Q9NYY3 685 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 THAP10Q9P2Z0 257 aaPredicted RBP8.32□□□□□ -1.08
SCN1A-207ENST00000507401 APEX2Q9UBZ4 518 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 SFMBT1Q9UHJ3 866 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 PLXND1Q9Y4D7 1925 aa8.32□□□□□ -1.08
SCN1A-207ENST00000507401 DCDC2BA2VCK2 349 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 KHNYNO15037 678 aaKnown RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 MAN1A2O60476 641 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 FYNP06241 537 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 VSIG8P0DPA2 414 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 KRT5P13647 590 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 SLC9A1P19634 815 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 PON1P27169 355 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 GMPRP36959 345 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 SLC11A2P49281 568 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 RGS7P49802 495 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 TBX4P57082 545 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 SNX16P57768 344 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 YWHAZP63104 245 aaKnown RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 NCAPHQ15003 741 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 SF3A2Q15428 464 aaKnown RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 MAN2A1Q16706 1144 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 EXOC3L4Q17RC7 722 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 GEN1Q17RS7 908 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 AASDHQ4L235 1098 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 STPG1Q5TH74 334 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 RNF43Q68DV7 783 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 ZNF662Q6ZS27 426 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 ANKS1BQ7Z6G8 1248 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 KIAA0907Q7Z7F0 614 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 KIAA1328Q86T90 577 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 CNGA4Q8IV77 575 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 APLFQ8IW19 511 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 RLN3Q8WXF3 142 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 DDX50Q9BQ39 737 aaKnown RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 LHX5Q9H2C1 402 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 FAM204AQ9H8W3 233 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 ACTR5Q9H9F9 607 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 ZDHHC4Q9NPG8 344 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 EVLQ9UI08 416 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 MBD1Q9UIS9 605 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-207ENST00000507401 INVSQ9Y283 1065 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 TLR6Q9Y2C9 796 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 STON1Q9Y6Q2 735 aa8.31□□□□□ -1.08
SCN1A-207ENST00000507401 NUP205Q92621 2012 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 WASH3PC4AMC7 463 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 ACSL4O60488 711 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 GLI1P08151 1106 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 NCAM1P13591 858 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 BCKDHBP21953 392 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 HOXD9P28356 352 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-207ENST00000507401 OXTRP30559 389 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 GNA15P30679 374 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 HNRNPH1P31943 449 aaKnown RBP8.3□□□□□ -1.08
SCN1A-207ENST00000507401 MTIF2P46199 727 aaKnown RBP8.3□□□□□ -1.08
SCN1A-207ENST00000507401 DHPSP49366 369 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-207ENST00000507401 BPIFB4P59827 614 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 MTA1Q13330 715 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 STARD3Q14849 445 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 C11orf91Q3C1V1 193 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 VWA3BQ502W6 1294 aa8.3□□□□□ -1.08
SCN1A-207ENST00000507401 PIK3R6Q5UE93 754 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms