RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 HOXD9P28356 352 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CDC25AP30304 524 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 DNAJA1P31689 397 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 HNRNPH3P31942 346 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SLC8A1P32418 973 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 NUDT1P36639 197 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 ABL2P42684 1182 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 KIR3DL1P43629 444 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 RECQLP46063 649 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 WNT7BP56706 349 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CLDN2P57739 230 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 ADAM8P78325 824 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TLE4Q04727 773 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SFSWAPQ12872 951 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SEMA5AQ13591 1074 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CDSNQ15517 529 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SOWAHAQ2M3V2 549 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 ZNF284Q2VY69 593 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 HNRNPA1L2Q32P51 320 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 EARS2Q5JPH6 523 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 AGBL4Q5VU57 503 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TBC1D3GQ6DHY5 549 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 HIST2H2BDQ6DRA6 164 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 OR6B2Q6IFH4 312 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TBC1D3CQ6IPX1 549 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 DUS1LQ6P1R4 473 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 C16orf46Q6P387 395 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SND1Q7KZF4 910 aaKnown RBP eCLIP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 PRPF39Q86UA1 669 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CATSPER3Q86XQ3 398 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 FAM217AQ8IXS0 508 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TBC1D3Q8IZP1 549 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 RBFAQ8N0V3 343 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 NXPE1Q8N323 547 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 BMPERQ8N8U9 685 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SYT2Q8N9I0 419 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 KYQ8NBH2 561 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 LRRN4CLQ8ND94 238 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 ST6GALNAC3Q8NDV1 305 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 WFDC5Q8TCV5 224 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 GANCQ8TET4 914 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CCDC12Q8WUD4 166 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 NRGNQ92686 78 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 INPP5DQ92835 1189 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 PNPLA2Q96AD5 504 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CENPTQ96BT3 561 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 FAM84AQ96KN4 292 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 MRGPRX3Q96LB0 322 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 BMFQ96LC9 184 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TAAR9Q96RI9 348 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 MYOCQ99972 504 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TREX2Q9BQ50 279 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TCHPQ9BT92 498 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 TMEM121Q9BTD3 319 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 DDA1Q9BW61 102 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SGPP1Q9BX95 441 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SLC2A11Q9BYW1 496 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CPEB1Q9BZB8 566 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 SYNDIG1Q9H7V2 258 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 FZD3Q9NPG1 666 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 UTP3Q9NQZ2 479 aaKnown RBP eCLIP3.49□□□□□ -1.853e-6■■■□□ 16.8
TCOF1-208ENST00000506063 SEMA3GQ9NS98 782 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 RCOR3Q9P2K3 495 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 ZBTB47Q9UFB7 747 aaPredicted RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 CPSF3Q9UKF6 684 aaKnown RBP3.49□□□□□ -1.85
TCOF1-208ENST00000506063 PCDHA4Q9UN74 947 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 RNF215Q9Y6U7 377 aa3.49□□□□□ -1.85
TCOF1-208ENST00000506063 DYSFO75923 2080 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 SEC16AO15027 2179 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 CCDC88CQ9P219 2028 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 POM121BA6NF01 834 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 GOLGA8AA7E2F4 631 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 GOLGA8BA8MQT2 603 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 LMO7DNF2Z398 122 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 YY2O15391 372 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 SLC31A1O15431 190 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 CLDN3O15551 220 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 ZBTB43O43298 467 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 CEACAM4O75871 244 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 DLGAP3O95886 979 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 GCFC2P16383 781 aaKnown RBP3.48□□□□□ -1.85
TCOF1-208ENST00000506063 C5AR1P21730 350 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 NFKBIAP25963 317 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 VARSP26640 1264 aaKnown RBP3.48□□□□□ -1.85
TCOF1-208ENST00000506063 YWHAQP27348 245 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 NOS2P35228 1153 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 STAT5AP42229 794 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 PSMD8P48556 350 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 PGDP52209 483 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 PEX3P56589 373 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 PER3P56645 1201 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 FOXM1Q08050 763 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 ABHD18Q0P651 414 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 TMEM132DQ14C87 1099 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 E2F5Q15329 346 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 PLEKHN1Q494U1 663 aaPredicted RBP3.48□□□□□ -1.85
TCOF1-208ENST00000506063 SETMARQ53H47 684 aaPredicted RBP3.48□□□□□ -1.85
TCOF1-208ENST00000506063 TDRD10Q5VZ19 366 aaKnown RBP3.48□□□□□ -1.85
TCOF1-208ENST00000506063 CPZQ66K79 652 aa3.48□□□□□ -1.85
TCOF1-208ENST00000506063 SLC39A4Q6P5W5 647 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms