RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RPS6KL1Q9Y6S9 549 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 TADA2AO75478 443 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 HNRNPH1P31943 449 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 ARHGAP36Q6ZRI8 547 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 NDUFAF2Q8N183 169 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 TBC1D31Q96DN5 1066 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 FCRL2Q96LA5 508 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 C8orf48Q96LL4 319 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 TSGA13Q96PP4 275 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 MYLK2Q9H1R3 596 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 LRRC40Q9H9A6 602 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 HMX1Q9NP08 348 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 PSAT1Q9Y617 370 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 KCNU1A8MYU2 1149 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 DFFAO00273 331 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 SYN3O14994 580 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 FGF10O15520 208 aaPredicted RBP21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 TROVE2P10155 538 aaKnown RBP eCLIP21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 COL6A1P12109 1028 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 SELPP16109 830 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 CRHR1P34998 444 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 DDR2Q16832 855 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 ZNF449Q6P9G9 518 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 RASSF3Q86WH2 238 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 NUP93Q8N1F7 819 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 ZNF398Q8TD17 642 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 CERS2Q96G23 380 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 BFARQ9NZS9 450 aa21.58■■□□□ 1.05
CCDC88B-208ENST00000492980 KLF11O14901 512 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 ALDH3A1P30838 453 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 GRK4P32298 578 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 OVGP1Q12889 678 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 PLEKHG4Q58EX7 1191 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 CNTD1Q8N815 330 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 DNAAF3Q8N9W5 541 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 ARMC2Q8NEN0 867 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 SERPINB11Q96P15 392 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 CATSPERBQ9H7T0 1116 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 IL1RAPL1Q9NZN1 696 aa21.58■■□□□ 1.04
CCDC88B-208ENST00000492980 CFAP73A6NFT4 308 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 NBNO60934 754 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 DCTN3O75935 186 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 IL1BP01584 269 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 ERVK-10P10266 1014 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 NEFHP12036 1026 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 CCNCP24863 283 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 SLC20A2Q08357 652 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 SETDB1Q15047 1291 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 TMEM135Q86UB9 458 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 MON1AQ86VX9 555 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 KLHDC8BQ8IXV7 354 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 ATPAF2Q8N5M1 289 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 PHF24Q9UPV7 400 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 PCDHB5Q9Y5E4 795 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 HS3ST4Q9Y661 456 aa21.57■■□□□ 1.04
CCDC88B-208ENST00000492980 C2CD2LO14523 706 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 CACNG3O60359 315 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ALDOAP04075 364 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 GPNMBQ14956 572 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 SMAD1Q15797 465 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 MSANTD2Q6P1R3 559 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 CYB5D1Q6P9G0 228 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 LZTR1Q8N653 840 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 RFWD2Q8NHY2 731 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ACMSDQ8TDX5 336 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 USP33Q8TEY7 942 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ZNF669Q96BR6 464 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ERP27Q96DN0 273 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 LRRC37BQ96QE4 947 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 MECRQ9BV79 373 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ELAC1Q9H777 363 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 KLC4Q9NSK0 619 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ZFATQ9P243 1243 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ADAM28Q9UKQ2 775 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 NYNRINQ9P2P1 1898 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ENPP3O14638 875 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 MOCS2O96007 188 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 GNRH1P01148 92 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 USP46P62068 366 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 FRG1Q14331 258 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 PRPSAP1Q14558 356 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 CTXN3Q4LDR2 81 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 CERCAMQ5T4B2 595 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 OTOP3Q7RTS5 596 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 APOL2Q9BQE5 337 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 SLC39A8Q9C0K1 460 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 FBXO44Q9H4M3 255 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 NDFIP2Q9NV92 336 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 UBP1Q9NZI7 540 aa21.56■■□□□ 1.04
CCDC88B-208ENST00000492980 ZCWPW2A0A1B0GU75 182 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 E9PAM4 449 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TPP1O14773 563 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 USP1O94782 785 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 TOP3BO95985 862 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 ITGA2BP08514 1039 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 CCNB1P14635 433 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 SKIV2L2P42285 1042 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 MAGEA11P43364 429 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 NPY2RP49146 381 aa21.55■■□□□ 1.04
CCDC88B-208ENST00000492980 NRG1Q02297 640 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms