RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SMG7Q92540 1137 aaKnown RBP11.79□□□□□ -0.52
C9orf3-220ENST00000489318 LRRC45Q96CN5 670 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 P2RY11Q96G91 374 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 SPATA13Q96N96 652 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 RPRD1AQ96P16 312 aaPredicted RBP11.79□□□□□ -0.52
C9orf3-220ENST00000489318 FMO2Q99518 471 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 VAT1Q99536 393 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 TXLNGYQ9BZA5 131 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 FOXP3Q9BZS1 431 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 PHACTR1Q9C0D0 580 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 ZNF446Q9NWS9 450 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 SMPD4Q9NXE4 827 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 LSM7Q9UK45 103 aaKnown RBP11.79□□□□□ -0.52
C9orf3-220ENST00000489318 MYO7AQ13402 2215 aa11.79□□□□□ -0.52
C9orf3-220ENST00000489318 LAMA2P24043 3122 aaKnown RBP11.79□□□□□ -0.52
C9orf3-220ENST00000489318 COL4A3Q01955 1670 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 A0A1B0GVM2 712 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 E2F8A0AVK6 867 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 TCAF2A6NFQ2 919 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 LEFTY2O00292 366 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 ATP8B1O43520 1251 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 MAFKO60675 156 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 OPHN1O60890 802 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CLDN11O75508 207 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 FAM153BP0C7A2 387 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 IRF1P10914 325 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CCNCP24863 283 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 HSPA9P38646 679 aaKnown RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 ITGA8P53708 1063 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 NRLP54845 237 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 YBEYP58557 167 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 IFI35P80217 286 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 TNK2Q07912 1038 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 HYAL1Q12794 435 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 PARP15Q460N3 678 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 FAM153CQ494X1 144 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 SPDYCQ5MJ68 293 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CHRDL2Q6WN34 429 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 GRASPQ7Z6J2 395 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 PCGF5Q86SE9 256 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CCDC13Q8IYE1 715 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 ATPAF2Q8N5M1 289 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CPT1BQ92523 772 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 PRCCQ92733 491 aaPredicted RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 CELF6Q96J87 481 aaKnown RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 FERMT1Q9BQL6 677 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 SLC39A8Q9C0K1 460 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 MTRF1LQ9UGC7 380 aaKnown RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 FAM153AQ9UHL3 310 aa11.78□□□□□ -0.52
C9orf3-220ENST00000489318 TPX2Q9ULW0 747 aaKnown RBP11.78□□□□□ -0.52
C9orf3-220ENST00000489318 RNF103O00237 685 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 RFXAPO00287 272 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 CHADO15335 359 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 PPFIA2O75334 1257 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 STK10O94804 968 aaKnown RBP11.77□□□□□ -0.53
C9orf3-220ENST00000489318 CEBPBP17676 345 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 PTPN3P26045 913 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ACTN2P35609 894 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 AVPR1AP37288 418 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 VPS41P49754 854 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 SGSHP51688 502 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 PLTPP55058 493 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 NTHL1P78549 312 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 AP1B1Q10567 949 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 SEMA5AQ13591 1074 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 KCNJ11Q14654 390 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 COL19A1Q14993 1142 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ZNF77Q15935 545 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TCEAL5Q5H9L2 206 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ANKRD20A2Q5SQ80 823 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 MPP7Q5T2T1 576 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ZNF697Q5TEC3 545 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ANKRD20A1Q5TYW2 823 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ANKRD20A3Q5VUR7 823 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TIGD7Q6NT04 549 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-220ENST00000489318 RFWD3Q6PCD5 774 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 POTEHQ6S545 545 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 B4GALNT4Q76KP1 1039 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TMC3Q7Z5M5 1100 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TFAP2DQ7Z6R9 452 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 GPR149Q86SP6 731 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 SETD3Q86TU7 594 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-220ENST00000489318 RELL1Q8IUW5 271 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 KLHDC8BQ8IXV7 354 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 PPIL6Q8IXY8 311 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 CCDC33Q8N5R6 958 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 NAT8LQ8N9F0 302 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 NETO2Q8NC67 525 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 HJURPQ8NCD3 748 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-220ENST00000489318 MAML1Q92585 1016 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 USP13Q92995 863 aaPredicted RBP11.77□□□□□ -0.53
C9orf3-220ENST00000489318 IL12RB2Q99665 862 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 FUT8Q9BYC5 575 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TSPYL1Q9H0U9 437 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 ZNF576Q9H609 170 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 KIF9Q9HAQ2 790 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 CFAP97Q9P2B7 532 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 IGSF9Q9P2J2 1179 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 TBC1D30Q9Y2I9 924 aa11.77□□□□□ -0.53
C9orf3-220ENST00000489318 SH3BP1Q9Y3L3 701 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms