RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 TNFAIP3P21580 790 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 MMP8P22894 467 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 OR1E1P30953 314 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 FLT3P36888 993 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 GGCXP38435 758 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 RECQLP46063 649 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 NUMBP49757 651 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 COPAP53621 1224 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 RPS14P62263 151 aaKnown RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 IRX4P78413 519 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 FMO1Q01740 532 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 CCDC15Q0P6D6 951 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 ELAVL3Q14576 367 aaKnown RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 PTPRNQ16849 979 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 CLEC16AQ2KHT3 1053 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 KLHL40Q2TBA0 621 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SKOR2Q2VWA4 1001 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 FSCBQ5H9T9 825 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 DCAF12L1Q5VU92 463 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 FAM46CQ5VWP2 391 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SLC23A3Q6PIS1 610 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 TFAP2DQ7Z6R9 452 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 KIAA0907Q7Z7F0 614 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 VPS36Q86VN1 386 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 MMAAQ8IVH4 418 aaKnown RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 ZCCHC9Q8N567 271 aaKnown RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 EMC1Q8N766 993 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 OR8D1Q8WZ84 308 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SKA1Q96BD8 255 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 ZNF419Q96HQ0 510 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-232ENST00000489053 NPY6RQ99463 290 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SPON2Q9BUD6 331 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 PCED1AQ9H1Q7 454 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SGK2Q9HBY8 427 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 DYRK4Q9NR20 520 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 FBXL12Q9NXK8 326 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 ARHGEF38Q9NXL2 777 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 KIAA1549LQ6ZVL6 1849 aa9.39□□□□□ -0.91
HDAC6-232ENST00000489053 SPAG17Q6Q759 2223 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 A0A1B0GTW7 788 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 LRRC10BA6NIK2 292 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 E9PAM4 449 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 C1QTNF3-AMACRE9PGA6 284 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ARHGAP33O14559 1287 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 EPHB6O15197 1021 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 CYP1A1P04798 512 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 MZF1P28698 734 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ETFBP38117 255 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 CTSOP43234 321 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 NOVA1P51513 510 aaKnown RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 C1QBPQ07021 282 aaKnown RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 NCAPHQ15003 741 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 CST6Q15828 149 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 SFMBT2Q5VUG0 894 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 RETSATQ6NUM9 610 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 DPY19L2P1Q6NXN4 242 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 SCYL2Q6P3W7 929 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 IL27RAQ6UWB1 636 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 USP30Q70CQ3 517 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ARCQ7LC44 396 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 SETD3Q86TU7 594 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 APCDD1Q8J025 514 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ATP11CQ8NB49 1132 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 RXFP2Q8WXD0 754 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 IGSF8Q969P0 613 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 MYEOVQ96EZ4 313 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 PGAP3Q96FM1 320 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 C1orf74Q96LT6 269 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 HAPLN3Q96S86 360 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 PRMT1Q99873 361 aaKnown RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 FEM1AQ9BSK4 669 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ZDHHC5Q9C0B5 715 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 ZYG11BQ9C0D3 744 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 RSPH9Q9H1X1 276 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 PABPC3Q9H361 631 aaKnown RBP9.38□□□□□ -0.91
HDAC6-232ENST00000489053 CD248Q9HCU0 757 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 CD93Q9NPY3 652 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 RXFP3Q9NSD7 469 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 TMEM74BQ9NUR3 256 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 HPCAL4Q9UM19 191 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 MYO6Q9UM54 1294 aa9.38□□□□□ -0.91
HDAC6-232ENST00000489053 TMCO5BA8MYB1 307 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 CBX4O00257 560 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 MID1O15344 667 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 BCAT2O15382 392 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-232ENST00000489053 CER1O95813 267 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 CHRNB2P17787 502 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 GPD1P21695 349 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 MAOBP27338 520 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 SLC8A1P32418 973 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 PTPN9P43378 593 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 STK19P49842 368 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-232ENST00000489053 DNA2P51530 1060 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 AFF3P51826 1226 aaKnown RBP9.37□□□□□ -0.91
HDAC6-232ENST00000489053 C21orf59P57076 290 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 KLHL30Q0D2K2 578 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 DLG2Q15700 870 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 TDRD12Q587J7 1177 aaKnown RBP9.37□□□□□ -0.91
HDAC6-232ENST00000489053 SLC45A4Q5BKX6 768 aa9.37□□□□□ -0.91
HDAC6-232ENST00000489053 EFHC2Q5JST6 749 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms