RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 AADATQ8N5Z0 425 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 ATP6V0D2Q8N8Y2 350 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 ZNF606Q8WXB4 792 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 FAM129BQ96TA1 746 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 SRRTQ9BXP5 876 aaKnown RBP19.02■□□□□ 0.64
HDAC6-231ENST00000488905 THAP9Q9H5L6 903 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 ACP6Q9NPH0 428 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 FTSJ1Q9UET6 329 aa19.02■□□□□ 0.64
HDAC6-231ENST00000488905 MYLKQ15746 1914 aa19.02■□□□□ 0.63
HDAC6-231ENST00000488905 KCNU1A8MYU2 1149 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 WNT1P04628 370 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 PDGFRAP16234 1089 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 MZF1P28698 734 aaPredicted RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 NUMBP49757 651 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 CCR5P51681 352 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 EIF4EBP2Q13542 120 aaPredicted RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 SLC12A1Q13621 1099 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 ELAVL3Q14576 367 aaKnown RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 TTC39BQ5VTQ0 682 aaPredicted RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 SND1Q7KZF4 910 aaKnown RBP eCLIP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 PTPRN2Q92932 1015 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 SKA1Q96BD8 255 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 ELF4Q99607 663 aaPredicted RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 PRMT1Q99873 361 aaKnown RBP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 FAM204AQ9H8W3 233 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 AASDHPPTQ9NRN7 309 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.01■□□□□ 0.63
HDAC6-231ENST00000488905 DKK4Q9UBT3 224 aa19.01■□□□□ 0.63
HDAC6-231ENST00000488905 A0A1B0GVM2 712 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 TCAF2A6NFQ2 919 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 GOT1P17174 413 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 C5AR1P21730 350 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 CD38P28907 300 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 SULT2A1Q06520 285 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 TAF5Q15542 800 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 RABGAP1LQ5R372 815 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 GJB7Q6PEY0 223 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 TRIM65Q6PJ69 517 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 MARCH9Q86YJ5 346 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 CCAR2Q8N163 923 aaKnown RBP19■□□□□ 0.63
HDAC6-231ENST00000488905 OR14C36Q8NHC7 312 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 SLC2A13Q96QE2 648 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 DDIT4Q9NX09 232 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 SLC12A6Q9UHW9 1150 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 TPX2Q9ULW0 747 aaKnown RBP19■□□□□ 0.63
HDAC6-231ENST00000488905 RAXQ9Y2V3 346 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 BPTFQ12830 3046 aa19■□□□□ 0.63
HDAC6-231ENST00000488905 DOCK4Q8N1I0 1966 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 SYNJ2BP-COX16A0A087WUM0 186 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 A0A1W2PR77 199 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 BECN2A8MW95 431 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 FGFR1OPO95684 399 aaKnown RBP18.99■□□□□ 0.63
HDAC6-231ENST00000488905 IL1BP01584 269 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 SLC2A3P11169 496 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 VAV1P15498 845 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 ABCB4P21439 1286 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 NNMTP40261 264 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 COL9A2Q14055 689 aaPredicted RBP18.99■□□□□ 0.63
HDAC6-231ENST00000488905 SMAD1Q15797 465 aaKnown RBP18.99■□□□□ 0.63
HDAC6-231ENST00000488905 CCDC157Q569K6 752 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 CXorf57Q6NSI4 855 aaKnown RBP18.99■□□□□ 0.63
HDAC6-231ENST00000488905 C19orf48Q6RUI8 117 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 GATAD2AQ86YP4 633 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 FAM81BQ96LP2 452 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 SPAG5Q96R06 1193 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 CPXM1Q96SM3 734 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 CRACR2AQ9BSW2 395 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 COX16Q9P0S2 106 aa18.99■□□□□ 0.63
HDAC6-231ENST00000488905 FAM149AA5PLN7 773 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 WNT9AO14904 365 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 YKT6O15498 198 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 HSF2BPO75031 334 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 GLI1P08151 1106 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 CCR1P32246 355 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 DRD3P35462 400 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 PPP2CBP62714 309 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 PPP2CAP67775 309 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 CDK17Q00537 523 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 CENPCQ03188 943 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 CAMK2BQ13554 666 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 PRAMEF14Q5SWL7 426 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 DHRS13Q6UX07 377 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 DEFB106AQ8N104 65 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 FRS2Q8WU20 508 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 FAM131CQ96AQ9 280 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 SERAC1Q96JX3 654 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 GDF3Q9NR23 364 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 ASNSD1Q9NWL6 643 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 APEX2Q9UBZ4 518 aa18.98■□□□□ 0.63
HDAC6-231ENST00000488905 LATO43561 262 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 ITGAVP06756 1048 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 EPHA8P29322 1005 aaPredicted RBP18.97■□□□□ 0.63
HDAC6-231ENST00000488905 USP8P40818 1118 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 PLK1P53350 603 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 METAP1P53582 386 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 OXCT1P55809 520 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 SHBQ15464 509 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 ARHGAP44Q17R89 818 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 COL28A1Q2UY09 1125 aa18.97■□□□□ 0.63
HDAC6-231ENST00000488905 FBXL22Q6P050 247 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms