RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 FGF10O15520 208 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 CACNG3O60359 315 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 TULP3O75386 442 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 ZRANB2O95218 330 aaKnown RBP eCLIP10.59□□□□□ -0.71
SKA1-204ENST00000488454 LUC7L3O95232 432 aaKnown RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 FTCDO95954 541 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 F12P00748 615 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 KRT1P04264 644 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 APODP05090 189 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 RHOQP17081 205 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 HOXD9P28356 352 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 OR1E1P30953 314 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 CTHP32929 405 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 EIF2DP41214 584 aaKnown RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 SOX9P48436 509 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 HCAR3P49019 387 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 DGKGP49619 791 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 GALK1P51570 392 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 SGSHP51688 502 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 RWDD2BP57060 319 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 SKOR1P84550 965 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 C5orf22Q49AR2 442 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 ATP13A4Q4VNC1 1196 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 ZNF569Q5MCW4 686 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 C6orf118Q5T5N4 469 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 FAM72AQ5TYM5 149 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 TXNRD3NBQ6F5E7 133 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 GRAMD4Q6IC98 578 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 FAM72DQ6L9T8 149 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 TPRG1Q6ZUI0 275 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 CYP4V2Q6ZWL3 525 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 CHST9Q7L1S5 443 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 TFAP2DQ7Z6R9 452 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 NT5DC3Q86UY8 548 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 FAM72BQ86X60 149 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 SUGP1Q8IWZ8 645 aaKnown RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 RCOR2Q8IZ40 523 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 SIX5Q8N196 739 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 FIBINQ8TAL6 211 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 EDAQ92838 391 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 MYEOVQ96EZ4 313 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 KCTD15Q96SI1 283 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 NELL2Q99435 816 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 MFSD1Q9H3U5 465 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 PCDH18Q9HCL0 1135 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 ARHGEF4Q9NR80 690 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 ARHGEF3Q9NR81 526 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 MPP6Q9NZW5 540 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 RCOR3Q9P2K3 495 aaPredicted RBP10.59□□□□□ -0.71
SKA1-204ENST00000488454 PCDHA3Q9Y5H8 950 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 CAPN6Q9Y6Q1 641 aa10.59□□□□□ -0.71
SKA1-204ENST00000488454 CNTN5O94779 1100 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 RHOCP08134 193 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 GOT1P17174 413 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 DRD1P21728 446 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 KDELR1P24390 212 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 CTNNA2P26232 953 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 CTNNA1P35221 906 aaKnown RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 GRIA2P42262 883 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 SLC6A11P48066 632 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 MAPKAPK2P49137 400 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 SIGLEC14Q08ET2 396 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 SLC12A1Q13621 1099 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 RPS6KA1Q15418 735 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 ALFQ53S48 1182 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 MANEALQ5VSG8 457 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 RFX8Q6ZV50 586 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 SETD3Q86TU7 594 aaPredicted RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 CIR1Q86X95 450 aaPredicted RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 CCDC50Q8IVM0 306 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 ETFBKMTQ8IXQ9 262 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 KATNAL2Q8IYT4 538 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 ZNF683Q8IZ20 524 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 CCDC26Q8TAB7 109 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 RAPGEF5Q92565 580 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 RBM41Q96IZ5 413 aaKnown RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 KLHL11Q9NVR0 708 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 CWC15Q9P013 229 aaKnown RBP10.58□□□□□ -0.72
SKA1-204ENST00000488454 MAP10Q9P2G4 905 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 FBXO10Q9UK96 956 aa10.58□□□□□ -0.72
SKA1-204ENST00000488454 KANSL1LA0AUZ9 987 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 WASH4PA8MWX3 477 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 PI4K2BG5E9Z4 385 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 NCAM2O15394 837 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 TIMM44O43615 452 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 KAT7O95251 611 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 CISD3P0C7P0 127 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 ZFXP17010 805 aaPredicted RBP10.57□□□□□ -0.72
SKA1-204ENST00000488454 ERCC2P18074 760 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 ETFBP38117 255 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 OPRD1P41143 372 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 TNFRSF4P43489 277 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 DNA2P51530 1060 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 ARSEP51690 589 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 STARD6P59095 220 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 KDSRQ06136 332 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 SEMA3BQ13214 749 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 DPYSL3Q14195 570 aa10.57□□□□□ -0.72
SKA1-204ENST00000488454 POLD3Q15054 466 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms