RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 RNASEH2AO75792 299 aaKnown RBP23.29■■□□□ 1.32
PTPN4-211ENST00000488279 CYP11B1P15538 503 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 GRIA4P48058 902 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 GALCP54803 685 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 RNASE9P60153 205 aaKnown RBP23.29■■□□□ 1.32
PTPN4-211ENST00000488279 KCNMA1Q12791 1236 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 ZNF177Q13360 481 aaPredicted RBP23.29■■□□□ 1.32
PTPN4-211ENST00000488279 KCNJ12Q14500 433 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 STK40Q8N2I9 435 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 PTPRN2Q92932 1015 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 IGSF8Q969P0 613 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 FAM129BQ96TA1 746 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 SERGEFQ9UGK8 458 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 VANGL2Q9ULK5 521 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 FZD4Q9ULV1 537 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 FNDC3AQ9Y2H6 1198 aaKnown RBP23.29■■□□□ 1.32
PTPN4-211ENST00000488279 HS3ST4Q9Y661 456 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 SPEGQ15772 3267 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 USP24Q9UPU5 2620 aa23.29■■□□□ 1.32
PTPN4-211ENST00000488279 LRRC72A6NJI9 287 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 PAGE1O75459 146 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 STK19P49842 368 aaPredicted RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 SUZ12Q15022 739 aaKnown RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 CXorf57Q6NSI4 855 aaKnown RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 ADAT2Q7Z6V5 191 aaKnown RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 CHCHD4Q8N4Q1 142 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 KDF1Q8NAX2 398 aaPredicted RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 C18orf8Q96DM3 657 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 WDCPQ9H6R7 721 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 SAMSN1Q9NSI8 373 aaKnown RBP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.28■■□□□ 1.32
PTPN4-211ENST00000488279 ADAMTS1Q9UHI8 967 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 PCOLCE2Q9UKZ9 415 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 MSRB2Q9Y3D2 182 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 PCDHGB2Q9Y5G2 931 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 SNX11Q9Y5W9 270 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 FHOD1Q9Y613 1164 aa23.28■■□□□ 1.32
PTPN4-211ENST00000488279 CBFA2T3O75081 653 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 ADH1BP00325 375 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 IGHV4-34P06331 123 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 GOT1P17174 413 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 C5AR1P21730 350 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 CDH5P33151 784 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-211ENST00000488279 PSMD8P48556 350 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 NUMBP49757 651 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 CENPCQ03188 943 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 ELAVL3Q14576 367 aaKnown RBP23.27■■□□□ 1.32
PTPN4-211ENST00000488279 TCP11X2Q5H9J9 407 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 NCEH1Q6PIU2 408 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 DBX2Q6ZNG2 339 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 SND1Q7KZF4 910 aaKnown RBP eCLIP23.27■■□□□ 1.32
PTPN4-211ENST00000488279 OR2T34Q8NGX1 318 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 GATA6Q92908 595 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 NPY6RQ99463 290 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 FEM1AQ9BSK4 669 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 TMEM121BQ9BXQ6 578 aaPredicted RBP23.27■■□□□ 1.32
PTPN4-211ENST00000488279 SIK2Q9H0K1 926 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 KLK13Q9UKR3 277 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 STAP1Q9ULZ2 295 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 NUMA1Q14980 2115 aa23.27■■□□□ 1.32
PTPN4-211ENST00000488279 TMEM8BA6NDV4 472 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 CLDN11O75508 207 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 IL1BP01584 269 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 UCHL3P15374 230 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 EEF1GP26641 437 aaKnown RBP23.26■■□□□ 1.31
PTPN4-211ENST00000488279 GABRB2P47870 512 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 VASPP50552 380 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-211ENST00000488279 RACK1P63244 317 aaKnown RBP23.26■■□□□ 1.31
PTPN4-211ENST00000488279 RAB44Q7Z6P3 723 aaPredicted RBP23.26■■□□□ 1.31
PTPN4-211ENST00000488279 ERICH1Q86X53 443 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 SPAG5Q96R06 1193 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 ORAI3Q9BRQ5 295 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 NAA15Q9BXJ9 866 aaKnown RBP23.26■■□□□ 1.31
PTPN4-211ENST00000488279 STK33Q9BYT3 514 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 TKTL2Q9H0I9 626 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 PIGVQ9NUD9 493 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 TMEM51Q9NW97 253 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 SLC25A13Q9UJS0 675 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 PAXBP1Q9Y5B6 917 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 AKAP13Q12802 2813 aa23.26■■□□□ 1.31
PTPN4-211ENST00000488279 WDFY3Q8IZQ1 3526 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 ZFHX4Q86UP3 3567 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 A0A1W2PPC4 97 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 ZZEF1O43149 2961 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 F9P00740 461 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 FTH1P19P0C7X4 201 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 SCNN1AP37088 669 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 CXCR3P49682 368 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 CDH4P55283 916 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 C5orf22Q49AR2 442 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 ACCSLQ4AC99 568 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 BRMS1LQ5PSV4 323 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 TAF3Q5VWG9 929 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 C14orf80Q86SX3 495 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 GLRX5Q86SX6 157 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 AADATQ8N5Z0 425 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 OR14C36Q8NHC7 312 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 RHBDD1Q8TEB9 315 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 NT5C3BQ969T7 300 aa23.25■■□□□ 1.31
PTPN4-211ENST00000488279 SKA1Q96BD8 255 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms