RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NADSYN1Q6IA69 706 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 SLC25A45Q8N413 288 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 KCNE4Q8WWG9 221 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 MYEOVQ96EZ4 313 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 PRICKLE1Q96MT3 831 aaPredicted RBP17.77■□□□□ 0.44
VIM-204ENST00000478746 CYTH4Q9UIA0 394 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 DMTF1Q9Y222 760 aa17.77■□□□□ 0.44
VIM-204ENST00000478746 PYCARD-AS1I3L0S3 204 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 ARHGAP6O43182 974 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 KLK10O43240 276 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 USP12O75317 370 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 CD19P15391 556 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 DRD3P35462 400 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 NNMTP40261 264 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 LSSP48449 732 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 ERVPABLB-1P60509 514 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 GABREP78334 506 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 CDCP2Q5VXM1 449 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 CFAP52Q8N1V2 620 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 KLHDC7BQ96G42 594 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 DEPDC7Q96QD5 511 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 DPH1Q9BZG8 443 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 DOCK9Q9BZ29 2069 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 HECTD1Q9ULT8 2610 aa17.76■□□□□ 0.43
VIM-204ENST00000478746 PRAMEF26H0Y7S4 382 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 ACTN4O43707 911 aaKnown RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 OPA1O60313 960 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 RTN2O75298 545 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 DXOO77932 396 aaKnown RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 LUC7L3O95232 432 aaKnown RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 SETSIPP0DME0 302 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 VDRP11473 427 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 DGKAP23743 735 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 MXI1P50539 228 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 VAC14Q08AM6 782 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 ELAVL3Q14576 367 aaKnown RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 FOXD4L6Q3SYB3 417 aaPredicted RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 MS4A13Q5J8X5 152 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 FOXD4L5Q5VV16 416 aaPredicted RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 FOXD4L3Q6VB84 417 aaPredicted RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 TMC6Q7Z403 805 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 APCDD1Q8J025 514 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 OR4C6Q8NH72 309 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 FOXD4L4Q8WXT5 416 aaPredicted RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 IRGQQ8WZA9 623 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 TTC9Q92623 222 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 NUCKS1Q9H1E3 243 aaKnown RBP17.75■□□□□ 0.43
VIM-204ENST00000478746 POLR1BQ9H9Y6 1135 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 MAPK8IP1Q9UQF2 711 aa17.75■□□□□ 0.43
VIM-204ENST00000478746 PIK3R2O00459 728 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 SLC7A4O43246 635 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 STX10O60499 249 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 LTFP02788 710 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 RGS7P49802 495 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 METAP1P53582 386 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 MCCD1P59942 119 aaPredicted RBP17.74■□□□□ 0.43
VIM-204ENST00000478746 DCAF6Q58WW2 860 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 TRIM69Q86WT6 500 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 SPAG5Q96R06 1193 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 ABCG4Q9H172 646 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 OSBPL2Q9H1P3 480 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 KIAA1257Q9ULG3 409 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 SPTA1P02549 2419 aa17.74■□□□□ 0.43
VIM-204ENST00000478746 TDRD6O60522 2096 aaKnown RBP17.74■□□□□ 0.43
VIM-204ENST00000478746 PIEZO2Q9H5I5 2752 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 FFAR2O15552 330 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 PLRG1O43660 514 aaKnown RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 CSO75390 466 aaKnown RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 GABBR2O75899 941 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 WISP1O95388 367 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 MYL1P05976 194 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 CKMT1AP12532 417 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 VAV1P15498 845 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 STK19P49842 368 aaPredicted RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 YWHAEP62258 255 aaKnown RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 POM121L1PQ3SYA9 428 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 SETMARQ53H47 684 aaPredicted RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 FAM46CQ5VWP2 391 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 DSG4Q86SJ6 1040 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 SNRNP27Q8WVK2 155 aaKnown RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 CCDC47Q96A33 483 aaKnown RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 FAM131CQ96AQ9 280 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 EEF2KMTQ96G04 330 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 MED8Q96G25 268 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 FCRL2Q96LA5 508 aaPredicted RBP17.73■□□□□ 0.43
VIM-204ENST00000478746 THSD1Q9NS62 852 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 KLHL11Q9NVR0 708 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 UCKL1Q9NWZ5 548 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 CA5BQ9Y2D0 317 aa17.73■□□□□ 0.43
VIM-204ENST00000478746 A0A1B0GVM2 712 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 O00370 1275 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 SLC28A2O43868 658 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 MOCS2O96007 188 aaPredicted RBP17.72■□□□□ 0.43
VIM-204ENST00000478746 NUCB2P80303 420 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 KCNMA1Q12791 1236 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 CUL2Q13617 745 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 PMF1Q6P1K2 205 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 LGI2Q8N0V4 545 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 SLC35F5Q8WV83 523 aa17.72■□□□□ 0.43
VIM-204ENST00000478746 OR8D1Q8WZ84 308 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms