RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 RP1L1Q8IWN7 2480 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 HBP1O60381 514 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 LRIG2O94898 1065 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 ALG11Q2TAA5 492 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 RFTN2Q52LD8 501 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 DDX17Q92841 729 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FICDQ9BVA6 458 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF221Q9UK13 617 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 BAZ2AQ9UIF9 1905 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 ERN1O75460 977 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 ATXN8OSP0DMR3 200 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 EIF5AP63241 154 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 RIPOR1Q6ZS17 1223 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PLEKHG4BQ96PX9 1271 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 RAD18Q9NS91 495 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 GMIPQ9P107 970 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 TMCC2O75069 709 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 UMPSP11172 480 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SDC2P34741 201 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 BAG6P46379 1132 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PCSK7Q16549 785 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 GOLGA7BQ2TAP0 167 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SGO1Q5FBB7 561 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 C1QTNF1Q9BXJ1 281 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 POLR1BQ9H9Y6 1135 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 UGT2B11O75310 529 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 ERVK-24P63145 666 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 GCNT1Q02742 428 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 OTUD3Q5T2D3 398 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 ERAP2Q6P179 960 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 BNIPLQ7Z465 357 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 KCNMB4Q86W47 210 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SPAG16Q8N0X2 631 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 HOPXQ9BPY8 73 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 LIMD1Q9UGP4 676 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 LEF1Q9UJU2 399 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SLC22A2O15244 555 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SCN1BQ07699 218 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 MTX3Q5HYI7 312 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 UMODL1Q5DID0 1318 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 H7C4K7 107 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SNAP23O00161 211 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 EIF2S3P41091 472 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 TAF6P49848 677 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 TEFMQ96QE5 360 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 GNB5O14775 395 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 ITGAVP06756 1048 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SNRPB2P08579 225 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SERPINF2P08697 491 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 BGNP21810 368 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 POU1F1P28069 291 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 LHX1P48742 406 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 BTN3A2P78410 334 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 PRKCEQ02156 737 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 C10orf53Q8N6V4 93 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 BHLHE22Q8NFJ8 381 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 ADCY4Q8NFM4 1077 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 SPIRE2Q8WWL2 714 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 KLHL32Q96NJ5 620 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 MRPL57Q9BQC6 102 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 PGS1Q32NB8 556 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 N4BP2L1Q5TBK1 243 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 LRRC71Q8N4P6 559 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 ACTR8Q9H981 624 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 CMTM6Q9NX76 183 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 PSME2Q9UL46 239 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 PTGES3LE9PB15 166 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 GLI1P08151 1106 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 NMT1P30419 496 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 CYP2C18P33260 490 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 UCMAQ8WVF2 138 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 FIG4Q92562 907 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 FCGR1BQ92637 280 aa13.53□□□□□ -0.24
COL6A3-209ENST00000472056 C18orf25Q96B23 403 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-209ENST00000472056 CNTNAP5Q8WYK1 1306 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 LOC100506127A0A0U1RQW1 187 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 AXIN1O15169 862 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 KCNQ3O43525 872 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 TDRD10Q5VZ19 366 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 YAF2Q8IY57 180 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 POC5Q8NA72 575 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 DNAJB4Q9UDY4 337 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 ITGA11Q9UKX5 1188 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 CLTCQ00610 1675 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 APOC4-APOC2K7ER74 178 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 APOC2P02655 101 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 PROCP04070 461 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 PSMA1P25786 263 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF512Q96ME7 567 aaPredicted RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 FAM129BQ96TA1 746 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 RBM4BQ9BQ04 359 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 RBM4Q9BWF3 364 aaKnown RBP13.52□□□□□ -0.24
COL6A3-209ENST00000472056 KIAA1683Q9H0B3 1180 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 PIDD1Q9HB75 910 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 ARHGEF33A8MVX0 844 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 MRASO14807 208 aa13.52□□□□□ -0.24
COL6A3-209ENST00000472056 PGRMC2O15173 223 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms