RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 OR51F1A6NGY5 319 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 NCF1BA6NI72 391 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 NCF1CA8MVU1 366 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CA12O43570 354 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 GJB3O75712 270 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 NCF1P14598 390 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 NQO1P15559 274 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 GABRB2P47870 512 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 PRAMEP78395 509 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 MGAT5Q09328 741 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 TAF10Q12962 218 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 KCNJ11Q14654 390 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CRYMQ14894 314 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 TOP6BLQ8N6T0 577 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 TMEM174Q8WUU8 243 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 EBF4Q9BQW3 602 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 ABCG8Q9H221 673 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 PNPOQ9NVS9 261 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 ATP8B3O60423 1300 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CHADO15335 359 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 B4GALT3O60512 393 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 ZWINTO95229 277 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SERPINB6P35237 376 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CAP1Q01518 475 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 TUSC3Q13454 348 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 DPYSL2Q16555 572 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 DEFB115Q30KQ5 88 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 ARHGAP17Q68EM7 881 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 LAYNQ6UX15 382 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SDCCAG8Q86SQ7 713 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SLC44A1Q8WWI5 657 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 RSPH1Q8WYR4 309 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 FOXP3Q9BZS1 431 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 BRD8Q9H0E9 1235 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 XAB2Q9HCS7 855 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SLC2A6Q9UGQ3 507 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 TEX264Q9Y6I9 313 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 I6L893 689 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CNTN5O94779 1100 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 PTPN3P26045 913 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CCR1P32246 355 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 GARSP41250 739 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SCNN1BP51168 640 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 MPP1Q00013 466 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CSHL1Q14406 222 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 APOPT1Q96IL0 206 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 NUDCD1Q96RS6 583 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 GKN1Q9NS71 199 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 UTP6Q9NYH9 597 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 SENP1Q9P0U3 644 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 CDY1Q9Y6F8 540 aa14.04□□□□□ -0.16
CCDC88A-211ENST00000471947 RANBP2P49792 3224 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CBX4O00257 560 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CCNB1P14635 433 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 WEE1P30291 646 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CD86P42081 329 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 MPP3Q13368 585 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 PDK4Q16654 411 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ZNF470Q6ECI4 717 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 SLC41A1Q8IVJ1 513 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 TTC8Q8TAM2 541 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 PPP1R10Q96QC0 940 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 IPO11Q9UI26 975 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 MTO1Q9Y2Z2 717 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 A0A096LPK6 155 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 RBM47A0AV96 593 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 EDF1O60869 148 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 GSTA1P08263 222 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 GSTA2P09210 222 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 PMLP29590 882 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 USP46P62068 366 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ELF3P78545 371 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ACCSLQ4AC99 568 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ESRP1Q6NXG1 681 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 LINGO4Q6UY18 593 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 KCNMB4Q86W47 210 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 C10orf107Q8IVU9 208 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 MICAL1Q8TDZ2 1067 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 SMIM14Q96QK8 99 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ARL8BQ9NVJ2 186 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CDH9Q9ULB4 789 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 NEMP2A6NFY4 417 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 FCHO1O14526 889 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 DAB1O75553 588 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ALDH2P05091 517 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 OR1E1P30953 314 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CYP2C18P33260 490 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 SERPINB5P36952 375 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 PTPN9P43378 593 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 RASSF2P50749 326 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CLNS1AP54105 237 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 TBX4P57082 545 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 INTS6LQ5JSJ4 861 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 CGB2Q6NT52 195 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 ADGRD1Q6QNK2 874 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 BEGAINQ9BUH8 593 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 NMUR2Q9GZQ4 415 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 TMEM216Q9P0N5 145 aa14.03□□□□□ -0.16
CCDC88A-211ENST00000471947 RUVBL2Q9Y230 463 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms