RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RNF34Q969K3 372 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 MYLPFQ96A32 169 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 TXNDC16Q9P2K2 825 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 TSC2P49815 1807 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 MEI4A8MW99 385 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 CD1EP15812 388 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 SLC1A6P48664 564 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 TIFABQ6ZNK6 161 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 PSTKQ8IV42 348 aaKnown RBP19.54■□□□□ 0.72
VIM-203ENST00000469543 POU5F2Q8N7G0 328 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 UNKQ9C0B0 810 aaKnown RBP19.54■□□□□ 0.72
VIM-203ENST00000469543 SNX15Q9NRS6 342 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 NDFIP2Q9NV92 336 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 CPSF2Q9P2I0 782 aaKnown RBP19.54■□□□□ 0.72
VIM-203ENST00000469543 ZCWPW2A0A1B0GU75 182 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 TOMM70O94826 608 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 MT-CYBP00156 380 aaPredicted RBP19.53■□□□□ 0.72
VIM-203ENST00000469543 CLNS1AP54105 237 aaKnown RBP19.53■□□□□ 0.72
VIM-203ENST00000469543 TRIM32Q13049 653 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 ITGA9Q13797 1035 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 NAA25Q14CX7 972 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 UPP1Q16831 310 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 TEX9Q8N6V9 391 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 CXorf56Q9H5V9 222 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 IGSF9Q9P2J2 1179 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 MSI1O43347 362 aaKnown RBP19.53■□□□□ 0.72
VIM-203ENST00000469543 CD52P31358 61 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 PEX6Q13608 980 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 RAB41Q5JT25 222 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 TAC4Q86UU9 113 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 CNTD1Q8N815 330 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.53■□□□□ 0.72
VIM-203ENST00000469543 ARHGAP39Q9C0H5 1083 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 MAN1C1Q9NR34 630 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 THAP1Q9NVV9 213 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 SFMBT1Q9UHJ3 866 aa19.53■□□□□ 0.72
VIM-203ENST00000469543 ZNF157P51786 506 aaPredicted RBP19.52■□□□□ 0.72
VIM-203ENST00000469543 USP4Q13107 963 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 CYS1Q717R9 158 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 SMC1BQ8NDV3 1235 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 OR10T2Q8NGX3 314 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 CNGB3Q9NQW8 809 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.52■□□□□ 0.72
VIM-203ENST00000469543 MKS1Q9NXB0 559 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 AP2A1O95782 977 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 NMBRP28336 390 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 GARSP41250 739 aaKnown RBP19.52■□□□□ 0.72
VIM-203ENST00000469543 ITGA7Q13683 1181 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 SPDYAQ5MJ70 313 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 NAPRTQ6XQN6 538 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 PPP1R36Q96LQ0 422 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 SORT1Q99523 831 aa19.52■□□□□ 0.72
VIM-203ENST00000469543 EIF2B3Q9NR50 452 aaKnown RBP19.52■□□□□ 0.72
VIM-203ENST00000469543 DFFAO00273 331 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 TNPO2O14787 897 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 IL1BP01584 269 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 OR4Q2P0C623 313 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 HOXC8P31273 242 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 PGM1P36871 562 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 CCR10P46092 362 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 LHX1P48742 406 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 PPIDQ08752 370 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 RCN1Q15293 331 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 SLC25A41Q8N5S1 370 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 ZSCAN18Q8TBC5 510 aaPredicted RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 PIWIL2Q8TC59 973 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 NRG4Q8WWG1 115 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 RSRC1Q96IZ7 334 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 ATXN3LQ9H3M9 355 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 ARHGAP42A6NI28 874 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 M0QZ92 97 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 BIRC5O15392 142 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 SORBS2O94875 1100 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 PROCP04070 461 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 GNAT1P11488 350 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 THOC5Q13769 683 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 TAF11Q15544 211 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 ANKRD20A4Q4UJ75 823 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 KCTD11Q693B1 232 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 KYAT3Q6YP21 454 aaKnown RBP19.51■□□□□ 0.71
VIM-203ENST00000469543 SPATA6LQ8N4H0 392 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 FAM161BQ96MY7 647 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 CCDC106Q9BWC9 280 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 COPG2Q9UBF2 871 aa19.51■□□□□ 0.71
VIM-203ENST00000469543 WFS1O76024 890 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 THPOP40225 353 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 KRT72Q14CN4 511 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 TMEM135Q86UB9 458 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.5■□□□□ 0.71
VIM-203ENST00000469543 FERMT1Q9BQL6 677 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 THTPAQ9BU02 230 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 WWP1Q9H0M0 922 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 IARS2Q9NSE4 1012 aaKnown RBP19.5■□□□□ 0.71
VIM-203ENST00000469543 C20orf96Q9NUD7 363 aaPredicted RBP19.5■□□□□ 0.71
VIM-203ENST00000469543 BFARQ9NZS9 450 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 PADI3Q9ULW8 664 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 TBX10O75333 385 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 SKAP2O75563 359 aaPredicted RBP19.5■□□□□ 0.71
VIM-203ENST00000469543 GP5P40197 560 aa19.5■□□□□ 0.71
VIM-203ENST00000469543 TUBB3Q13509 450 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms