RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 DPCR1Q3MIW9 517 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 PTPN20Q4JDL3 420 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 VWA3BQ502W6 1294 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 MIIPQ5JXC2 388 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 DPY19L2P1Q6NXN4 242 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FBXL22Q6P050 247 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 DBX2Q6ZNG2 339 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC26A9Q7LBE3 791 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 CIR1Q86X95 450 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM71AQ8IYT1 594 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 CHCHD4Q8N4Q1 142 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 ZNF397Q8NF99 534 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 PTPRN2Q92932 1015 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 RPL10LQ96L21 214 aaKnown RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 RPRD1AQ96P16 312 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM129BQ96TA1 746 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 TUBGCP2Q9BSJ2 902 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 ADAMTS1Q9UHI8 967 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 DACH1Q9UI36 760 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FZD4Q9ULV1 537 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 ANKRD6Q9Y2G4 727 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 SNX11Q9Y5W9 270 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 TMEM131Q92545 1883 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FLRT2O43155 660 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 MZF1P28698 734 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 NOS2P35228 1153 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 NNMTP40261 264 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 STK19P49842 368 aaPredicted RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 GALCP54803 685 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 AUHQ13825 339 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 CXorf57Q6NSI4 855 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 NCEH1Q6PIU2 408 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 ZDHHC17Q8IUH5 632 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 STK40Q8N2I9 435 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 SETD7Q8WTS6 366 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 ADAMTS14Q8WXS8 1223 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 PPP1R9BQ96SB3 815 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 OMDQ99983 421 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 NEUROG2Q9H2A3 272 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 SYNCQ9H7C4 482 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 RRN3Q9NYV6 651 aa17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 APOBEC2Q9Y235 224 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-204ENST00000469003 PLXNA2O75051 1894 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 A0A1W2PPC4 97 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 FAM47DPA6NHR8 397 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 LRRC72A6NJI9 287 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 M0QYT0 321 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 RNASEH2AO75792 299 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 ADH1BP00325 375 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 C5AR1P21730 350 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 CDH5P33151 784 aaPredicted RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 PSMD8P48556 350 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 VASPP50552 380 aaPredicted RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 CENPCQ03188 943 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 NME3Q13232 169 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 ELAVL3Q14576 367 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 SUZ12Q15022 739 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 SND1Q7KZF4 910 aaKnown RBP eCLIP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 TMEM35BQ8NCS4 154 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 OR2T34Q8NGX1 318 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 BAHD1Q8TBE0 780 aaPredicted RBP17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 IGSF8Q969P0 613 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 ALG14Q96F25 216 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 PLCB1Q9NQ66 1216 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 VANGL2Q9ULK5 521 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 HS3ST4Q9Y661 456 aa17.07■□□□□ 0.32
CCDC28B-204ENST00000469003 TP53BP1Q12888 1972 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 SRRM3A6NNA2 597 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 C10orf142B7Z368 130 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 PAGE1O75459 146 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 GOT1P17174 413 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 CTSKP43235 329 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 CCR5P51681 352 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 RACK1P63244 317 aaKnown RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 KCNMA1Q12791 1236 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 RAPGEF1Q13905 1077 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 DRAP1Q14919 205 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 C5orf22Q49AR2 442 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 HSP90AA4PQ58FG1 418 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 KLHDC7AQ5VTJ3 777 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 OTUD1Q5VV17 481 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 LAYNQ6UX15 382 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 ADAT2Q7Z6V5 191 aaKnown RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 AADATQ8N5Z0 425 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 RHBDD1Q8TEB9 315 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 FRS2Q8WU20 508 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 ZCCHC14Q8WYQ9 949 aaKnown RBP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 NPY6RQ99463 290 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 CDC6Q99741 560 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 FEM1AQ9BSK4 669 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 NUP62CLQ9H1M0 184 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 PDCL3Q9H2J4 239 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 LHX6Q9UPM6 363 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 FHOD1Q9Y613 1164 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 DMXL2Q8TDJ6 3036 aa17.06■□□□□ 0.32
CCDC28B-204ENST00000469003 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 VILLO15195 856 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 CLDN11O75508 207 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 IL1BP01584 269 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms