RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ZMIZ1Q9ULJ6 1067 aa18.06■□□□□ 0.48
COL7A1-206ENST00000466591 FZD4Q9ULV1 537 aa18.06■□□□□ 0.48
COL7A1-206ENST00000466591 MSRB2Q9Y3D2 182 aa18.06■□□□□ 0.48
COL7A1-206ENST00000466591 SNX11Q9Y5W9 270 aa18.06■□□□□ 0.48
COL7A1-206ENST00000466591 CACNA1BQ00975 2339 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 MUC22E2RYF6 1773 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 FOXN3O00409 490 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 GJB3O75712 270 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 IGLV3-25P01717 112 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 PNMA6AP0CW24 399 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 ERCC5P28715 1186 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 CENPCQ03188 943 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 AUHQ13825 339 aaKnown RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 KCNJ12Q14500 433 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 ELAVL3Q14576 367 aaKnown RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 DPCR1Q3MIW9 517 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 C9orf64Q5T6V5 341 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 FAM102AQ5T9C2 384 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 TAF3Q5VWG9 929 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 FAM46CQ5VWP2 391 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 LAYNQ6UX15 382 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 LRRC31Q6UY01 552 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 ERICH1Q86X53 443 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 PNPLA1Q8N8W4 532 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 OR2T34Q8NGX1 318 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 LMLNQ96KR4 655 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 CCDC114Q96M63 670 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 SPAG5Q96R06 1193 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 NEUROG2Q9H2A3 272 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 WDCPQ9H6R7 721 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 PCOLCE2Q9UKZ9 415 aa18.05■□□□□ 0.48
COL7A1-206ENST00000466591 FARP1Q9Y4F1 1045 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3DA0A087WVF3 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3IA0A087WXS9 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3EA0A087X179 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3KA0A087X1G2 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 FAM170AA1A519 330 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3FA6NER0 549 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3LB9A6J9 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 C1QTNF3-AMACRE9PGA6 284 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3HP0C7X1 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 GOT1P17174 413 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 MZF1P28698 734 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 GALCP54803 685 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 RACK1P63244 317 aaKnown RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 KRT83P78385 493 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 DEUP1Q05D60 604 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 DRAP1Q14919 205 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3GQ6DHY5 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3CQ6IPX1 549 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 FBXL22Q6P050 247 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 OLFML1Q6UWY5 402 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 SLC26A9Q7LBE3 791 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 IRF2BP1Q8IU81 584 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 TBC1D3Q8IZP1 549 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 WDTC1Q8N5D0 677 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 MYO19Q96H55 970 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 PCMTD1Q96MG8 357 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-206ENST00000466591 OSGEPQ9NPF4 335 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 PCDHGB2Q9Y5G2 931 aa18.04■□□□□ 0.48
COL7A1-206ENST00000466591 ITIH6Q6UXX5 1313 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 GOLGA8SH3BPF8 625 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 PAGE1O75459 146 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 CLDN11O75508 207 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 F9P00740 461 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 RHOCP08134 193 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 GGCXP38435 758 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 GRK6P43250 576 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 IL9RQ01113 521 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 ARID5BQ14865 1188 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 PTPN20Q4JDL3 420 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 SMYD5Q6GMV2 418 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-206ENST00000466591 IGSF8Q969P0 613 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 C18orf8Q96DM3 657 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 SLC6A18Q96N87 628 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 TKTL2Q9H0I9 626 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 SIX2Q9NPC8 291 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 DYRK4Q9NR20 520 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 SERGEFQ9UGK8 458 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 AJAP1Q9UKB5 411 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-206ENST00000466591 TPX2Q9ULW0 747 aaKnown RBP18.03■□□□□ 0.48
COL7A1-206ENST00000466591 HS3ST4Q9Y661 456 aa18.03■□□□□ 0.48
COL7A1-206ENST00000466591 MAP1BP46821 2468 aaKnown RBP18.03■□□□□ 0.48
COL7A1-206ENST00000466591 CHD8Q9HCK8 2581 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 A0A1W2PPC4 97 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 KCNK3O14649 394 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 DFNA5O60443 496 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 CYP11B1P15538 503 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 EEF1GP26641 437 aaKnown RBP18.02■□□□□ 0.48
COL7A1-206ENST00000466591 CLCN1P35523 988 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 CDH4P55283 916 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 BRMS1LQ5PSV4 323 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 FKBP15Q5T1M5 1219 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 PRPF39Q86UA1 669 aaKnown RBP18.02■□□□□ 0.48
COL7A1-206ENST00000466591 FAM71AQ8IYT1 594 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 ATP11CQ8NB49 1132 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 ANKRD20A12PQ8NF67 263 aa18.02■□□□□ 0.48
COL7A1-206ENST00000466591 ADAMTS14Q8WXS8 1223 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms