RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 KRTAP9-9Q9BYP9 154 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 KRTAP9-4Q9BYQ2 154 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 CARD9Q9H257 536 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 LRRC4Q9HBW1 653 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 GP6Q9HCN6 339 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 DMAP1Q9NPF5 467 aaPredicted RBP5.73□□□□□ -1.49
VPS41-211ENST00000466017 IGSF5Q9NSI5 407 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 TMLHEQ9NVH6 421 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 SUSD2Q9UGT4 822 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 AFF4Q9UHB7 1163 aaKnown RBP5.73□□□□□ -1.49
VPS41-211ENST00000466017 SNX12Q9UMY4 172 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 PRG3Q9Y2Y8 225 aaPredicted RBP5.73□□□□□ -1.49
VPS41-211ENST00000466017 PCDHA3Q9Y5H8 950 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 SAR1BQ9Y6B6 198 aa5.73□□□□□ -1.49
VPS41-211ENST00000466017 MRPL42Q9Y6G3 142 aaKnown RBP5.73□□□□□ -1.49
VPS41-211ENST00000466017 VWA8A3KMH1 1905 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 C2CD4BA6NLJ0 364 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 NT5C1B-RDH14C9J2C7 533 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 E5RJQ4 531 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 F8W810 466 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 I3L4J1 428 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 TULP2O00295 520 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 CLDN5O00501 218 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PAPSS1O43252 624 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 HCRTO43612 131 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 HAPLN1P10915 354 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 CCDC130P13994 396 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ATF2P15336 505 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 VAV1P15498 845 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ATP2A2P16615 1042 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 DESP17661 470 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ATF4P18848 351 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 COMTP21964 271 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 BDNFP23560 247 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ACAT1P24752 427 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 RFC1P35251 1148 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 PTPN9P43378 593 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 GLUD2P49448 558 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ZNF143P52747 638 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 DAOAP59103 153 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 RPL10AP62906 217 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 ADCY1Q08828 1119 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 EIF4EBP2Q13542 120 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 RPS6KA1Q15418 735 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 HADHQ16836 314 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 WHAMMP3Q1A5X7 153 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PAN2Q504Q3 1202 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 DNTTIP2Q5QJE6 756 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 OR6B2Q6IFH4 312 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 DNAJC24Q6P3W2 148 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 DCUN1D2Q6PH85 259 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 STRADAQ7RTN6 431 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 TAS1R1Q7RTX1 841 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PEX26Q7Z412 305 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 POLNQ7Z5Q5 900 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 DAAM2Q86T65 1068 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 TMEM173Q86WV6 379 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 VSIG1Q86XK7 387 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 DNAAF5Q86Y56 855 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 SPATA2LQ8IUW3 424 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 PSTKQ8IV42 348 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 PASD1Q8IV76 773 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 NUP93Q8N1F7 819 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 RASGEF1CQ8N431 466 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 CEP112Q8N8E3 955 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PDZD8Q8NEN9 1154 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 CMASQ8NFW8 434 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 ACTRT1Q8TDG2 376 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 HASPINQ8TF76 798 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 HDAC7Q8WUI4 952 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 OVCA2Q8WZ82 227 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 RABGGTAQ92696 567 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 RPGRIP1Q96KN7 1286 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 SLC2A13Q96QE2 648 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 TMEM209Q96SK2 561 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 CLSTN3Q9BQT9 956 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 CNPY3Q9BT09 278 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 MED10Q9BTT4 135 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 C11orf84Q9BUA3 381 aaPredicted RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 VN1R3Q9BXE9 311 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ZBP1Q9H171 429 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 FBXO44Q9H4M3 255 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PRDM16Q9HAZ2 1276 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 NGRNQ9NPE2 291 aaKnown RBP5.72□□□□□ -1.49
VPS41-211ENST00000466017 FAM49BQ9NUQ9 324 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 AP5S1Q9NUS5 200 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 EHD2Q9NZN4 543 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 ANAPC7Q9UJX3 599 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 HYOU1Q9Y4L1 999 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 MRFAP1Q9Y605 127 aa5.72□□□□□ -1.49
VPS41-211ENST00000466017 PCNTO95613 3336 aa5.71□□□□□ -1.49
VPS41-211ENST00000466017 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.71□□□□□ -1.5
VPS41-211ENST00000466017 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.71□□□□□ -1.5
VPS41-211ENST00000466017 MTMR11A4FU01 709 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 ZNF487B1APH4 448 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 PSTPIP1O43586 416 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 HSF2BPO75031 334 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 RNF8O76064 485 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 BEST1O76090 585 aa5.71□□□□□ -1.5
VPS41-211ENST00000466017 FGF18O76093 207 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms