RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TJP2Q9UDY2 1190 aa23.36■■□□□ 1.33
USP4-208ENST00000464168 PCDHGA1Q9Y5H4 931 aa23.36■■□□□ 1.33
USP4-208ENST00000464168 A0A087WV48 116 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 PPP1R3GB7ZBB8 358 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 ENC1O14682 589 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 LDOC1O95751 146 aaPredicted RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 TRUB2O95900 331 aaKnown RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 ITGAVP06756 1048 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 VAV1P15498 845 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 ABCB4P21439 1286 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 BMP6P22004 513 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 MZF1P28698 734 aaPredicted RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 YWHAZP63104 245 aaKnown RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 PITX1P78337 314 aaPredicted RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 KCNH2Q12809 1159 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 EIF4EBP2Q13542 120 aaPredicted RBP23.35■■□□□ 1.33
USP4-208ENST00000464168 KLHL10Q6JEL2 608 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 TRIM59Q8IWR1 403 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 SERAC1Q96JX3 654 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 POPDC2Q9HBU9 364 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 GDF3Q9NR23 364 aa23.35■■□□□ 1.33
USP4-208ENST00000464168 E5RJQ4 531 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 E9PAM4 449 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 TLR4O00206 839 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 LATO43561 262 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 IL1BP01584 269 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 KRT5P13647 590 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 DRD3P35462 400 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 PPP1R2P41236 205 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 NUMBP49757 651 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 NUCB2P80303 420 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 DNAJC3Q13217 504 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 SLC12A1Q13621 1099 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 ELAVL3Q14576 367 aaKnown RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 MEA1Q16626 185 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 FOXR2Q6PJQ5 311 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 FRS2Q8WU20 508 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 NELFBQ8WX92 580 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 ZNF606Q8WXB4 792 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 CNDP2Q96KP4 475 aaKnown RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 BBC3Q96PG8 261 aaPredicted RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 PRMT1Q99873 361 aaKnown RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 INTS2Q9H0H0 1204 aaKnown RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 THAP9Q9H5L6 903 aa23.34■■□□□ 1.33
USP4-208ENST00000464168 TPX2Q9ULW0 747 aaKnown RBP23.34■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3DA0A087WVF3 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3IA0A087WXS9 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3EA0A087X179 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3KA0A087X1G2 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3FA6NER0 549 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 KCNU1A8MYU2 1149 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3LB9A6J9 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 F5H5T6 163 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 PLK4O00444 970 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 LETM1O95202 739 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3HP0C7X1 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 PDGFRAP16234 1089 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 PLK1P53350 603 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 METAP1P53582 386 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 CLDN6P56747 220 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 NXPH1P58417 271 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 PPP2CBP62714 309 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 PPP2CAP67775 309 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TAF5Q15542 800 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3GQ6DHY5 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3CQ6IPX1 549 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 CIR1Q86X95 450 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 ELOA2Q8IYF1 753 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 TBC1D3Q8IZP1 549 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 CCAR2Q8N163 923 aaKnown RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 EID2Q8N6I1 236 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 MED15Q96RN5 788 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 UBE2TQ9NPD8 197 aaPredicted RBP23.33■■□□□ 1.33
USP4-208ENST00000464168 ACP6Q9NPH0 428 aa23.33■■□□□ 1.33
USP4-208ENST00000464168 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.33■■□□□ 1.33
USP4-208ENST00000464168 COL5A1P20908 1838 aaPredicted RBP23.33■■□□□ 1.32
USP4-208ENST00000464168 YKT6O15498 198 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 C1SP09871 688 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 JUPP14923 745 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 EPHA8P29322 1005 aaPredicted RBP23.32■■□□□ 1.32
USP4-208ENST00000464168 NNMTP40261 264 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 ARRB1P49407 418 aaPredicted RBP23.32■■□□□ 1.32
USP4-208ENST00000464168 BNIP3Q12983 259 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 ATP6V0D2Q8N8Y2 350 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 TSC1Q92574 1164 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 FAM131CQ96AQ9 280 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 ERVMER34-1Q9H9K5 563 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 ARHGAP20Q9P2F6 1191 aa23.32■■□□□ 1.32
USP4-208ENST00000464168 HELZ2Q9BYK8 2649 aaKnown RBP23.31■■□□□ 1.32
USP4-208ENST00000464168 ARID1BQ8NFD5 2236 aaPredicted RBP23.31■■□□□ 1.32
USP4-208ENST00000464168 MED7O43513 233 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 RFPL3O75679 317 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 AFPP02771 609 aaKnown RBP23.31■■□□□ 1.32
USP4-208ENST00000464168 CDK4P11802 303 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 RXRGP48443 463 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 ACADVLP49748 655 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 MARSP56192 900 aaKnown RBP23.31■■□□□ 1.32
USP4-208ENST00000464168 SULT2A1Q06520 285 aa23.31■■□□□ 1.32
USP4-208ENST00000464168 CXorf57Q6NSI4 855 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms