RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MORF4L1Q9UBU8 362 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 KLF11O14901 512 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 PLIN3O60664 434 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 SNNO75324 88 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 SPAG6O75602 509 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 KLHL2O95198 593 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 XRCC1P18887 633 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 RABGGTBP53611 331 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 SNAPC2Q13487 334 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 STILQ15468 1287 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 GOLGA7BQ2TAP0 167 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 GLRA4Q5JXX5 417 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 NAPRTQ6XQN6 538 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 KDELC2Q7Z4H8 507 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ARHGAP18Q8N392 663 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 DRAXINQ8NBI3 349 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 CMTM5Q96DZ9 223 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 SCYL1Q96KG9 808 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 DDX43Q9NXZ2 648 aaKnown RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ADA2Q9NZK5 511 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 LTFP02788 710 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ITGA2BP08514 1039 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 FAM200BP0CF97 657 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF286BP0CG31 522 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 CPA3P15088 417 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 GOT1P17174 413 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 FDFT1P37268 417 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ANKRD20A4Q4UJ75 823 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 PACS1Q6VY07 963 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 CCNYL1Q8N7R7 359 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 BHLHE22Q8NFJ8 381 aaPredicted RBP12.72□□□□□ -0.37
HDAC4-208ENST00000463007 GRIN3AQ8TCU5 1115 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 HPDLQ96IR7 371 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 SYBUQ9NX95 663 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 ITGA11Q9UKX5 1188 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 AP4B1Q9Y6B7 739 aa12.72□□□□□ -0.37
HDAC4-208ENST00000463007 VTNP04004 478 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 AOC1P19801 751 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 MPSTP25325 297 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PCSK6P29122 969 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 THOP1P52888 689 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PRAMEP78395 509 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 KYAT1Q16773 422 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 HSP90AA5PQ58FG0 334 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PPP1R26Q5T8A7 1209 aaPredicted RBP12.71□□□□□ -0.37
HDAC4-208ENST00000463007 SESTD1Q86VW0 696 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 FBXW8Q8N3Y1 598 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 COLGALT1Q8NBJ5 622 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 AFG1LQ8WV93 481 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 CDKL2Q92772 493 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 SORT1Q99523 831 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ARHGAP26Q9UNA1 814 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 TDRKHQ9Y2W6 561 aaKnown RBP12.71□□□□□ -0.37
HDAC4-208ENST00000463007 SNX9Q9Y5X1 595 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 C2CD4BA6NLJ0 364 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 H3BSA7 217 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PRKCHP24723 683 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 EPHX2P34913 555 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 TUBB3Q13509 450 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ZBTB6Q15916 424 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 FAM47CQ5HY64 1035 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 C9orf131Q5VYM1 1079 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 KLHDC10Q6PID8 442 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 LCLAT1Q6UWP7 414 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 CYP2R1Q6VVX0 501 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF534Q76KX8 674 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 NT5DC4Q86YG4 428 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 APLFQ8IW19 511 aaPredicted RBP12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PCDH20Q8N6Y1 951 aaKnown RBP12.71□□□□□ -0.37
HDAC4-208ENST00000463007 PNPLA1Q8N8W4 532 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ACVR1CQ8NER5 493 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF669Q96BR6 464 aaPredicted RBP12.71□□□□□ -0.37
HDAC4-208ENST00000463007 RCN3Q96D15 328 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 ADAMTS10Q9H324 1103 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
HDAC4-208ENST00000463007 UNCXA6NJT0 531 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 PHGDHO43175 533 aaKnown RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 GABBR2O75899 941 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 SEC24DO94855 1032 aaPredicted RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 GSRP00390 522 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 SERPINE1P05121 402 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 VDRP11473 427 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 PSMB4P28070 264 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 HOXA11P31270 313 aaPredicted RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 ETFBP38117 255 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 ADCYAP1R1P41586 468 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 ABCE1P61221 599 aaKnown RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 KLF10Q13118 480 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 LSAMPQ13449 338 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 PID1Q7Z2X4 250 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 GPRC5AQ8NFJ5 357 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 KHSRPQ92945 711 aaKnown RBP eCLIP12.71□□□□□ -0.389e-7■■■■□ 25.2
HDAC4-208ENST00000463007 NPAS2Q99743 824 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 OMDQ99983 421 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 C20orf96Q9NUD7 363 aaPredicted RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 GJD2Q9UKL4 321 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 BARX2Q9UMQ3 279 aaPredicted RBP12.71□□□□□ -0.38
HDAC4-208ENST00000463007 COMMD3-BMI1R4GMX3 469 aa12.71□□□□□ -0.38
HDAC4-208ENST00000463007 GRM5P41594 1212 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms