RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 APBA1Q02410 837 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 SFSWAPQ12872 951 aaKnown RBP16.62■□□□□ 0.25
COL7A1-204ENST00000462475 GATAD2AQ86YP4 633 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 CCAR2Q8N163 923 aaKnown RBP16.62■□□□□ 0.25
COL7A1-204ENST00000462475 MED15Q96RN5 788 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 PRMT1Q99873 361 aaKnown RBP16.62■□□□□ 0.25
COL7A1-204ENST00000462475 CRACR2AQ9BSW2 395 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 THAP9Q9H5L6 903 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 FAM204AQ9H8W3 233 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 RAXQ9Y2V3 346 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 PLXNA2O75051 1894 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 PTPRBP23467 1997 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 BAHCC1Q9P281 2608 aa16.62■□□□□ 0.25
COL7A1-204ENST00000462475 SYNJ2BP-COX16A0A087WUM0 186 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 A0A1W2PR77 199 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 KCNU1A8MYU2 1149 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 GADD45BO75293 160 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-204ENST00000462475 ADH1BP00325 375 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 GOT1P17174 413 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 METAP1P53582 386 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 PPP2CBP62714 309 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 PPP2CAP67775 309 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 BECN1Q14457 450 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 SHBQ15464 509 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 INAVAQ3KP66 663 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 CXorf57Q6NSI4 855 aaKnown RBP16.61■□□□□ 0.25
COL7A1-204ENST00000462475 TRIM65Q6PJ69 517 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 ATP6V0D2Q8N8Y2 350 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 OR14C36Q8NHC7 312 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 CPXM1Q96SM3 734 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 ELF4Q99607 663 aaPredicted RBP16.61■□□□□ 0.25
COL7A1-204ENST00000462475 AASDHPPTQ9NRN7 309 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 COX16Q9P0S2 106 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 FTSJ1Q9UET6 329 aa16.61■□□□□ 0.25
COL7A1-204ENST00000462475 CBX4O00257 560 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 DFNA5O60443 496 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 IL1BP01584 269 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 C5AR1P21730 350 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 CD38P28907 300 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 DRD3P35462 400 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 IRAK1P51617 712 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 CCR5P51681 352 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 CENPCQ03188 943 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 CAMK2BQ13554 666 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 ELAVL3Q14576 367 aaKnown RBP16.6■□□□□ 0.25
COL7A1-204ENST00000462475 SMAD1Q15797 465 aaKnown RBP16.6■□□□□ 0.25
COL7A1-204ENST00000462475 ARHGAP44Q17R89 818 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 COL28A1Q2UY09 1125 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 DHRS13Q6UX07 377 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 SND1Q7KZF4 910 aaKnown RBP eCLIP16.6■□□□□ 0.25
COL7A1-204ENST00000462475 ENOSF1Q7L5Y1 443 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 PASD1Q8IV76 773 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 DEFB106AQ8N104 65 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 GALNT15Q8N3T1 639 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 WDTC1Q8N5D0 677 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 SLC2A13Q96QE2 648 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.6■□□□□ 0.25
COL7A1-204ENST00000462475 DDIT4Q9NX09 232 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 ACACAQ13085 2346 aa16.6■□□□□ 0.25
COL7A1-204ENST00000462475 A0A1B0GVM2 712 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 TCAF2A6NFQ2 919 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 PLK4O00444 970 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 GRAP2O75791 330 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SLC9A1P19634 815 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 GGCXP38435 758 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 USP8P40818 1118 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 CDK17Q00537 523 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SLC12A1Q13621 1099 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 RABGAP1LQ5R372 815 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 TTC39BQ5VTQ0 682 aaPredicted RBP16.59■□□□□ 0.25
COL7A1-204ENST00000462475 FBXL22Q6P050 247 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 OR52K2Q8NGK3 314 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 FRS2Q8WU20 508 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SKA1Q96BD8 255 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SERAC1Q96JX3 654 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 GDF3Q9NR23 364 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 DKK4Q9UBT3 224 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SLC12A6Q9UHW9 1150 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 SARDHQ9UL12 918 aa16.59■□□□□ 0.25
COL7A1-204ENST00000462475 NYNRINQ9P2P1 1898 aaKnown RBP16.59■□□□□ 0.25
COL7A1-204ENST00000462475 TRABD2BA6NFA1 517 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 LATO43561 262 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 RTN2O75298 545 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 GLI1P08151 1106 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 ABCB4P21439 1286 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 CCR1P32246 355 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 NNMTP40261 264 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 PLK1P53350 603 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 CLDN6P56747 220 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 NXPH1P58417 271 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 SULT2A1Q06520 285 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 CYP4F3Q08477 520 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.58■□□□□ 0.24
COL7A1-204ENST00000462475 FAM183BPQ6ZVS7 135 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 PDZD3Q86UT5 571 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 C1orf131Q8NDD1 294 aaKnown RBP16.58■□□□□ 0.24
COL7A1-204ENST00000462475 SAP25Q8TEE9 199 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 SHC3Q92529 594 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 FAM131CQ96AQ9 280 aa16.58■□□□□ 0.24
COL7A1-204ENST00000462475 ALG14Q96F25 216 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms