RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 WDR78Q5VTH9 848 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 IL31Q6EBC2 164 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 CENPSQ8N2Z9 138 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 MAML3Q96JK9 1138 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 SLX1AQ9BQ83 275 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 SLC39A3Q9BRY0 314 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 SOX17Q9H6I2 414 aaPredicted RBP11.96□□□□□ -0.5
CPSF3-202ENST00000460593 PDLIM7Q9NR12 457 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 SYBUQ9NX95 663 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 SEPT10Q9P0V9 454 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 CORINQ9Y5Q5 1042 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 GIPC1O14908 333 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 BCAS2O75934 225 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 MICAL2O94851 1124 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 MT-CO1P00395 513 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 GRK2P25098 689 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 KRT76Q01546 638 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 PTK2BQ14289 1009 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 LDLRAP1Q5SW96 308 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 HMBOX1Q6NT76 420 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 PPP1R2P3Q6NXS1 205 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 GPR180Q86V85 440 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 CARM1Q86X55 608 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 LRRC43Q8N309 656 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 LGMNQ99538 433 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 FAM49BQ9NUQ9 324 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 DCDC2Q9UHG0 476 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 ZDHHC2Q9UIJ5 367 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 AP4S1Q9Y587 144 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF839A8K0R7 811 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 E7ENX8 843 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 G3V2L1 256 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 PIGNO95427 931 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 UGT1A1P22309 533 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 UGT1A4P22310 534 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 HOXA10P31260 410 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 UGT1A3P35503 534 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 UGT1A5P35504 534 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 AVPR1AP37288 418 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 MAGEA3P43357 314 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 GNA12Q03113 381 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 NIPAL4Q0D2K0 466 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TFDP2Q14188 446 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 DACT2Q5SW24 774 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 C16orf87Q6PH81 154 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TIFABQ6ZNK6 161 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 HERC6Q8IVU3 1022 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TMEM192Q8IY95 271 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 OFCC1Q8IZS5 231 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 CATSPER1Q8NEC5 780 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 MCPH1Q8NEM0 835 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 SLCO4A1Q96BD0 722 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 COX4I2Q96KJ9 171 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 SNRNP25Q9BV90 132 aaKnown RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF341Q9BYN7 854 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 INO80BQ9C086 356 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 ASNSD1Q9NWL6 643 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TXNDC16Q9P2K2 825 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 PRPF19Q9UMS4 504 aaKnown RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 RIPK3Q9Y572 518 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 CDY2AQ9Y6F7 541 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 CDY1Q9Y6F8 540 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 STRCQ7RTU9 1775 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TMEM247A6NEH6 219 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 CDH5P33151 784 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 AARS2Q5JTZ9 985 aaKnown RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 ZFP1Q6P2D0 407 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 DCDC5Q6ZRR9 648 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 FAM183BPQ6ZVS7 135 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 IFNLR1Q8IU57 520 aaPredicted RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 RPL10LQ96L21 214 aaKnown RBP11.95□□□□□ -0.5
CPSF3-202ENST00000460593 TMEM39BQ9GZU3 492 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 PCDHGC3Q9UN70 934 aa11.95□□□□□ -0.5
CPSF3-202ENST00000460593 DOCK5Q9H7D0 1870 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 RGL2O15211 777 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 SPTLC1O15269 473 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 HTRA2O43464 458 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 MYL4P12829 197 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 MX2P20592 715 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 GPD1P21695 349 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 C21orf59P57076 290 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 PMS2P3Q13401 168 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 BAATQ14032 418 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 CYP2A13Q16696 494 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ARL13AQ5H913 290 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 RPS27LQ71UM5 84 aaKnown RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 SNX29P2Q8IUI4 249 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 NAT16Q8N8M0 369 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 PLEKHA8Q96JA3 519 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 FCRL3Q96P31 734 aaPredicted RBP11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF518BQ9C0D4 1074 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ELOVL4Q9GZR5 314 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 PXMP2Q9NR77 195 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 TBC1D23Q9NUY8 699 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 WDR37Q9Y2I8 494 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 TRIM17Q9Y577 477 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 ZNF24P17028 368 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 CYP2F1P24903 491 aa11.94□□□□□ -0.5
CPSF3-202ENST00000460593 SFNP31947 248 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms