RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RPL10LQ96L21 214 aaKnown RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 PRICKLE1Q96MT3 831 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 SLC6A18Q96N87 628 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 SPAG5Q96R06 1193 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ZSWIM1Q9BR11 485 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ORAI3Q9BRQ5 295 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ERVMER34-1Q9H9K5 563 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 UBE2TQ9NPD8 197 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 A0A087WV48 116 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 FAM149AA5PLN7 773 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 LETM1O95202 739 aaPredicted RBP13.72□□□□□ -0.21
HMGB3-204ENST00000448905 TRUB2O95900 331 aaKnown RBP13.72□□□□□ -0.21
HMGB3-204ENST00000448905 AFPP02771 609 aaKnown RBP13.72□□□□□ -0.21
HMGB3-204ENST00000448905 CCR1P32246 355 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 CTSOP43234 321 aaPredicted RBP13.72□□□□□ -0.21
HMGB3-204ENST00000448905 PSMD8P48556 350 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 OVGP1Q12889 678 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 CAMK2BQ13554 666 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 ACCSLQ4AC99 568 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 SYPL2Q5VXT5 272 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 RAP1GAP2Q684P5 730 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 KLHL10Q6JEL2 608 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 FOXR2Q6PJQ5 311 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 LRRC69Q6ZNQ3 347 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 MMS22LQ6ZRQ5 1243 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 IQCHQ86VS3 1027 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 MARCH9Q86YJ5 346 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 GATAD2AQ86YP4 633 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 APCDD1Q8J025 514 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 STK40Q8N2I9 435 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 EID2Q8N6I1 236 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 LMO3Q8TAP4 145 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 SAP25Q8TEE9 199 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 PTPRN2Q92932 1015 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 KAT5Q92993 513 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 SLC4A5Q9BY07 1137 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 CNTN6Q9UQ52 1028 aa13.72□□□□□ -0.21
HMGB3-204ENST00000448905 FARP1Q9Y4F1 1045 aaPredicted RBP13.72□□□□□ -0.21
HMGB3-204ENST00000448905 ITIH6Q6UXX5 1313 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-204ENST00000448905 RRP8O43159 456 aaKnown RBP13.71□□□□□ -0.21
HMGB3-204ENST00000448905 SLC7A4O43246 635 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 RFPL3O75679 317 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 GLI1P08151 1106 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 RXRGP48443 463 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 PLK1P53350 603 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 ZNF177Q13360 481 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-204ENST00000448905 ILKQ13418 452 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 SOWAHCQ53LP3 525 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-204ENST00000448905 HS1BP3Q53T59 392 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 EFHC1Q5JVL4 640 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 DENND1BQ6P3S1 775 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 TAC4Q86UU9 113 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 NELFBQ8WX92 580 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 ZNF606Q8WXB4 792 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 OR8D1Q8WZ84 308 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 ERCC4Q92889 916 aaPredicted RBP13.71□□□□□ -0.21
HMGB3-204ENST00000448905 NXPE2Q96DL1 559 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 EBF2Q9HAK2 575 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 SERGEFQ9UGK8 458 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 SLC25A13Q9UJS0 675 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 DMTF1Q9Y222 760 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 AK5Q9Y6K8 562 aa13.71□□□□□ -0.21
HMGB3-204ENST00000448905 DSPP15924 2871 aaKnown RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 A0A1B0GVM2 712 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 A0A1W2PR77 199 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 TCAF2A6NFQ2 919 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 C1QTNF3-AMACRE9PGA6 284 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 THAP12O43422 761 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 CALCAP01258 141 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 MZF1P28698 734 aaPredicted RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 USP8P40818 1118 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 VASPP50552 380 aaPredicted RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 ADPRHP54922 357 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 NXPH1P58417 271 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 KCNJ12Q14500 433 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 NAPEPLDQ6IQ20 393 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 TTI2Q6NXR4 508 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 ARHGEF19Q8IW93 802 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 CCAR2Q8N163 923 aaKnown RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 AADATQ8N5Z0 425 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 MYEOVQ96EZ4 313 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 NOX5Q96PH1 765 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 SRRTQ9BXP5 876 aaKnown RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 INTS2Q9H0H0 1204 aaKnown RBP13.7□□□□□ -0.22
HMGB3-204ENST00000448905 FAM204AQ9H8W3 233 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 DDIT4Q9NX09 232 aa13.7□□□□□ -0.22
HMGB3-204ENST00000448905 E5RJQ4 531 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 PRAMEF26H0Y7S4 382 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 PLK4O00444 970 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 LATO43561 262 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 RNGTTO60942 597 aaKnown RBP13.69□□□□□ -0.22
HMGB3-204ENST00000448905 WNT1P04628 370 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 PDGFRAP16234 1089 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 CKMT2P17540 419 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 GNA15P30679 374 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 ABCG1P45844 678 aa13.69□□□□□ -0.22
HMGB3-204ENST00000448905 TARDBPQ13148 414 aaKnown RBP eCLIP13.69□□□□□ -0.22
HMGB3-204ENST00000448905 BECN1Q14457 450 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms