RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 ANKS1BQ7Z6G8 1248 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 NGDNQ8NEJ9 315 aaKnown RBP4.58□□□□□ -1.68
VPS29-202ENST00000447578 ST8SIA4Q92187 359 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 CPT1BQ92523 772 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 CENPIQ92674 756 aaPredicted RBP4.58□□□□□ -1.68
VPS29-202ENST00000447578 ERP27Q96DN0 273 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 ZNF668Q96K58 619 aaPredicted RBP4.58□□□□□ -1.68
VPS29-202ENST00000447578 HIST1H2AAQ96QV6 131 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 TWNKQ96RR1 684 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 PTDSS2Q9BVG9 487 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 ZCWPW1Q9H0M4 648 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 DERAQ9Y315 318 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 SPHKAPQ2M3C7 1700 aa4.58□□□□□ -1.68
VPS29-202ENST00000447578 MYOM2P54296 1465 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZNF518AQ6AHZ1 1483 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 BLMP54132 1417 aaPredicted RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 POGZQ7Z3K3 1410 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 INSRP06213 1382 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FANCIQ9NVI1 1328 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 A0A087X0M5 115 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 A0A1B0GX30 115 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 A0A1W2PPH5 198 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A18PA6NE21 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A16PA6NEW6 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A9PA6NNJ1 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A5PA8MXJ8 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 SLC16A3O15427 465 aaKnown RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 CD3EAPO15446 510 aaKnown RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 TAF5LO75529 589 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A15PP0C7V4 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FAM90A14PP0C7W9 464 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 HGFP14210 728 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 GATMP50440 423 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 PGDP52209 483 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CLNS1AP54105 237 aaKnown RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 PDE1AP54750 535 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 NAP1L1P55209 391 aaKnown RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 HOXA4Q00056 320 aaPredicted RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 NUCB1Q02818 461 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CCNIQ14094 377 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CSHL1Q14406 222 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 KRT32Q14532 448 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 DAZAP2Q15038 168 aaPredicted RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZNF260Q3ZCT1 412 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 TRIM60Q495X7 471 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZNF569Q5MCW4 686 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 MAP3K21Q5TCX8 1036 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ARHGAP40Q5TG30 622 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 SPATA1Q5VX52 437 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ICE2Q659A1 982 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 HAUS3Q68CZ6 603 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ACAD10Q6JQN1 1059 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 RINLQ6ZS11 566 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 BBS12Q6ZW61 710 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 SYT13Q7L8C5 426 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FASTKD5Q7L8L6 764 aaKnown RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZNF804AQ7Z570 1209 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 WDR53Q7Z5U6 358 aaPredicted RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 SLC15A3Q8IY34 581 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 GALNT16Q8N428 558 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 LRRC71Q8N4P6 559 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 HMGB4Q8WW32 186 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZUFSPQ96AP4 578 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZDHHC12Q96GR4 267 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 ZBTB45Q96K62 511 aaPredicted RBP4.57□□□□□ -1.68
VPS29-202ENST00000447578 ASB2Q96Q27 587 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 REEP2Q9BRK0 252 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 NUDT22Q9BRQ3 303 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CHCHD6Q9BRQ6 235 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CXorf36Q9H7Y0 433 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 G6PC2Q9NQR9 355 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 FSCN3Q9NQT6 498 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 NDUFAF4Q9P032 175 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 PI4KBQ9UBF8 816 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 KCND3Q9UK17 655 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CNTN6Q9UQ52 1028 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 SSX2IPQ9Y2D8 614 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 CEP152O94986 1710 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 IQGAP1P46940 1657 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 MROH1Q8NDA8 1641 aa4.57□□□□□ -1.68
VPS29-202ENST00000447578 EFCAB6Q5THR3 1501 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 LMTK2Q8IWU2 1503 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 NOS1P29475 1434 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 EXOC5O00471 708 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 ZBED4O75132 1171 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 RTN3O95197 1032 aaPredicted RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 PDE8BO95263 885 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 HNRNPA1P09651 372 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS29-202ENST00000447578 SERPINA4P29622 427 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 NTSR1P30989 418 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 FOXG1P55316 489 aaPredicted RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS29-202ENST00000447578 SMAD1Q15797 465 aaKnown RBP4.56□□□□□ -1.68
VPS29-202ENST00000447578 P3H1Q32P28 736 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 TTC22Q5TAA0 569 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 SLC9C2Q5TAH2 1124 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 ATG16L1Q676U5 607 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 C16orf54Q6UWD8 224 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 CLEC9AQ6UXN8 241 aa4.56□□□□□ -1.68
VPS29-202ENST00000447578 ZNF517Q6ZMY9 492 aaPredicted RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms