RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PDAP1Q13442 181 aaKnown RBP12.13□□□□□ -0.47
MSH6-204ENST00000445503 KYAT1Q16773 422 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 SLC9B1Q4ZJI4 515 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 TMEM198Q66K66 360 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 TMC7Q7Z402 723 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 KCTD4Q8WVF5 259 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 ZNF560Q96MR9 790 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CPNE1Q99829 537 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 SNX13Q9Y5W8 968 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 SLX4Q8IY92 1834 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 KLF11O14901 512 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 GCATO75600 419 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CHRNGP07510 517 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CYP2C8P10632 490 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CYP3A5P20815 502 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CCR10P46092 362 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 GRIA4P48058 902 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 LAMC2Q13753 1193 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 PPM1LQ5SGD2 360 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 ARMCX6Q7L4S7 300 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 PLPPR4Q7Z2D5 763 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 GALNT15Q8N3T1 639 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 SNX31Q8N9S9 440 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 OR6J1Q8NGC5 347 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 FAM192AQ9GZU8 254 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 CHRAC1Q9NRG0 131 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 SLC25A27O95847 323 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 UQCRBP14927 111 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 ERCC2P18074 760 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TPSB2P20231 275 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 NDUFV1P49821 464 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TAF6P49848 677 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TPSAB1Q15661 275 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SATL1Q86VE3 508 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 UBR7Q8N806 425 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 PHF21BQ96EK2 531 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 EPAS1Q99814 870 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 ACE2Q9BYF1 805 aaPredicted RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 EFCAB1Q9HAE3 211 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SORCS3Q9UPU3 1222 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SNX10Q9Y5X0 201 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TK2O00142 265 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CASQ2O14958 399 aaPredicted RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 MAP3K13O43283 966 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TIMM44O43615 452 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 RNASEH1O60930 286 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 ALDOAP04075 364 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 SETSIPP0DME0 302 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CYP2C9P11712 490 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 PIK3R1P27986 724 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SLC26A2P50443 739 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SLC12A1Q13621 1099 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 PTK2BQ14289 1009 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CCDC153Q494R4 210 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 OLFML1Q6UWY5 402 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 ZNF567Q8N184 647 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 FBXW8Q8N3Y1 598 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 B4GALNT2Q8NHY0 566 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 OR52B2Q96RD2 323 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CCDC106Q9BWC9 280 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 NXF3Q9H4D5 531 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 ARHGEF4Q9NR80 690 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 RHBDL2Q9NX52 303 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 RNF103-CHMP3A0A140T963 221 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TSPAN8P19075 237 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CHN2P52757 468 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 GHRHRQ02643 423 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CTBP1Q13363 440 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CSHL1Q14406 222 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 SLC41A1Q8IVJ1 513 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 TP53INP2Q8IXH6 220 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 PLD6Q8N2A8 252 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 ACMSDQ8TDX5 336 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 DIS3LQ8TF46 1054 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 QKIQ96PU8 341 aaKnown RBP eCLIP12.12□□□□□ -0.47
MSH6-204ENST00000445503 NPAS2Q99743 824 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 CCT7Q99832 543 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 EFHD1Q9BUP0 239 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 R3HDMLQ9H3Y0 253 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 WDCPQ9H6R7 721 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 ETAA1Q9NY74 926 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 UBQLN1Q9UMX0 589 aaKnown RBP12.12□□□□□ -0.47
MSH6-204ENST00000445503 ACOT9Q9Y305 439 aa12.12□□□□□ -0.47
MSH6-204ENST00000445503 AKAP10O43572 662 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 NFKB1P19838 968 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 TPD52P55327 224 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 GRIK4Q16099 956 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 CNPY1Q3B7I2 92 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 MBLAC2Q68D91 279 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 FSTL4Q6MZW2 842 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 ANKRD52Q8NB46 1076 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 VPS39Q96JC1 886 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 GATA5Q9BWX5 397 aaPredicted RBP12.11□□□□□ -0.47
MSH6-204ENST00000445503 CDH19Q9H159 772 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 CCDC167Q9P0B6 97 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 MORF4L1Q9UBU8 362 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 A0A088AWK7 358 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 MDM4O15151 490 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 FAM200BP0CF97 657 aa12.11□□□□□ -0.47
MSH6-204ENST00000445503 FGF3P11487 239 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms