RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 IRF6O14896 467 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 FAM155BO75949 473 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ERCC2P18074 760 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 YY1P25490 414 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ABCG1P45844 678 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 GDF10P55107 478 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ZRANB3Q5FWF4 1079 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 SAMD4BQ5PRF9 694 aaKnown RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 IQSEC1Q6DN90 963 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 PRMT9Q6P2P2 845 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 C10orf107Q8IVU9 208 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 LRRN4Q8WUT4 740 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 APPL1Q9UKG1 709 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 CHD4Q14839 1912 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 HOXB8P17481 243 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 GBE1Q04446 702 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 NAT8LQ8N9F0 302 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 L3MBTL3Q96JM7 780 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 SENP8Q96LD8 212 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 CINPQ9BW66 212 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 UNKQ9C0B0 810 aaKnown RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 CDHR5Q9HBB8 845 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 TRPC7Q9HCX4 862 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ZNF536O15090 1300 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 C2CD4BA6NLJ0 364 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 DAB1O75553 588 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 LYPLA1O75608 230 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 SOX11P35716 441 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 HARS2P49590 506 aaKnown RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 NFYCQ13952 458 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 PAN2Q504Q3 1202 aaKnown RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 NEPROQ6NW34 567 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 TAF2Q6P1X5 1199 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 RP9Q8TA86 221 aaKnown RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 FIZ1Q96SL8 496 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 SYBUQ9NX95 663 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ZNF214Q9UL59 606 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 PKP3Q9Y446 797 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 C10orf71Q711Q0 1435 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 TMEM63AO94886 807 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 USP17L7P0C7H9 530 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 ALDH1A3P47895 512 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 SERPINB10P48595 397 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 XIAPP98170 497 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 NFE2Q16621 373 aaPredicted RBP16.95■□□□□ 0.3
TCOF1-206ENST00000445265 MIB1Q86YT6 1006 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 GPRC5DQ9NZD1 345 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 HES2Q9Y543 173 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 MYH15Q9Y2K3 1946 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 DOT1LQ8TEK3 1739 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 CNTNAP2Q9UHC6 1331 aa16.95■□□□□ 0.3
TCOF1-206ENST00000445265 TMCC1O94876 653 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 NFKB1P19838 968 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 TWF1Q12792 350 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 SLC25A52Q3SY17 297 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 AARS2Q5JTZ9 985 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 DHFR2Q86XF0 187 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 VPS50Q96JG6 964 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 TMEM79Q9BSE2 394 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 AFF4Q9UHB7 1163 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PRPF19Q9UMS4 504 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 NRCAMQ92823 1304 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CASTOR2A6NHX0 329 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 HIST1H2AGP0C0S8 130 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 HIST1H2ADP20671 130 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 TUBP50607 506 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 OVOS1Q6IE37 1185 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PIWIL4Q7Z3Z4 852 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 C7orf43Q8WVR3 580 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 C18orf25Q96B23 403 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 HIST1H2AHQ96KK5 128 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 HIST1H2AJQ99878 128 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MRPL45Q9BRJ2 306 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 H2AFJQ9BTM1 129 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CADM1Q9BY67 442 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MUC3BQ9H195 1237 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 UBR2Q8IWV8 1755 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CRTAMO95727 393 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CCNB1P14635 433 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PTPN9P43378 593 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PKNOX1P55347 436 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MFSD10Q14728 455 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 ILDR2Q71H61 639 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CMASQ8NFW8 434 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 C12orf42Q96LP6 360 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 QKIQ96PU8 341 aaKnown RBP eCLIP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 POMKQ9H5K3 350 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 RUBCNLQ9H714 662 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 COPS7BQ9H9Q2 264 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PRG3Q9Y2Y8 225 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 TRAFD1O14545 582 aaPredicted RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MT-CO1P00395 513 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 CHN2P52757 468 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MRPS5P82675 430 aaKnown RBP16.94■□□□□ 0.3
TCOF1-206ENST00000445265 PPIL2Q13356 520 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 WSCD1Q658N2 575 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 SLC26A9Q7LBE3 791 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 MCRS1Q96EZ8 462 aa16.94■□□□□ 0.3
TCOF1-206ENST00000445265 ASB2Q96Q27 587 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms