RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 RNF139Q8WU17 664 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CERS2Q96G23 380 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CPNE1Q99829 537 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PPP1R12CQ9BZL4 782 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 SNX15Q9NRS6 342 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 DAB1O75553 588 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 POLBP06746 335 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 UBTFL6P0CB48 400 aaPredicted RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 ERVK-10P10266 1014 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 ELNP15502 786 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 TYK2P29597 1187 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 HOXA11P31270 313 aaPredicted RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PSEN2P49810 448 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CACNB2Q08289 660 aaPredicted RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CCNIQ14094 377 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PDK1Q15118 436 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CCDC153Q494R4 210 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 RAPH1Q70E73 1250 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 RSPH3Q86UC2 560 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 DEFB106AQ8N104 65 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 ZNF567Q8N184 647 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CD99L2Q8TCZ2 262 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 JADE3Q92613 823 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PPP2R3CQ969Q6 453 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PGBD4Q96DM1 585 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 FERMT1Q9BQL6 677 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CFHR5Q9BXR6 569 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 CEP41Q9BYV8 373 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PIDD1Q9HB75 910 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 ZDHHC7Q9NXF8 308 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 MYO18AQ92614 2054 aaKnown RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PDCD11Q14690 1871 aaKnown RBP16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 HAS3O00219 553 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 CPA3P15088 417 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 CDK7P50613 346 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 ITGA9Q13797 1035 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 PAFAH1B3Q15102 231 aaKnown RBP16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 THEMIS2Q5TEJ8 643 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 BSPRYQ5W0U4 402 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 BNIPLQ7Z465 357 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 NETO2Q8NC67 525 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 CMTM5Q96DZ9 223 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 CCDC28BQ9BUN5 200 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 FAM192AQ9GZU8 254 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 PAPOLBQ9NRJ5 636 aaKnown RBP16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 IL1RAPL1Q9NZN1 696 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 TXNDC16Q9P2K2 825 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 CDH22Q9UJ99 828 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 PCDHB12Q9Y5F1 795 aa16.77■□□□□ 0.28
CLCNKA-203ENST00000439316 PGK1P00558 417 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 PDGFRBP09619 1106 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 PRDX6P30041 224 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 MLH1P40692 756 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SERPINB8P50452 374 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 PAPOLAP51003 745 aaKnown RBP16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 PURAQ00577 322 aaKnown RBP16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SATB1Q01826 763 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 GNASQ5JWF2 1037 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 GLRA4Q5JXX5 417 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC27A1Q6PCB7 646 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 ALKAL1Q6UXT8 129 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 RNF111Q6ZNA4 994 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 DCLK2Q8N568 766 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SLC2A14Q8TDB8 520 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 FCRL3Q96P31 734 aaPredicted RBP16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 RBBP8Q99708 897 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 EIF2AQ9BY44 585 aaKnown RBP16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 FAM49AQ9H0Q0 323 aaPredicted RBP16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SEPT10Q9P0V9 454 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 RPS6KL1Q9Y6S9 549 aa16.77■□□□□ 0.27
CLCNKA-203ENST00000439316 SEPT4O43236 478 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 CAPN15O75808 1086 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 ITGAXP20702 1163 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 LMO2P25791 158 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 CALRP27797 417 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 GNL1P36915 607 aaPredicted RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 GMPRP36959 345 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 LIMK2P53671 638 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 GJA9P57773 515 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 TMEM62Q0P6H9 643 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 IFRD2Q12894 506 aaPredicted RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 DPYSQ14117 519 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 FRG1Q14331 258 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 SMAD1Q15797 465 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 C11orf91Q3C1V1 193 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 FBXO47Q5MNV8 452 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 VWA5B1Q5TIE3 1220 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 CES3Q6UWW8 571 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 CMC1Q7Z7K0 106 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 PDSS2Q86YH6 399 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 GALNT15Q8N3T1 639 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 PYDC1Q8WXC3 89 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 PRDM12Q9H4Q4 367 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF358Q9NW07 568 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 SRRDQ9UH36 339 aa16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 ZNF638Q14966 1978 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-203ENST00000439316 PIRO00625 290 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 XPO1O14980 1071 aaKnown RBP16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PDE5AO76074 875 aa16.75■□□□□ 0.27
CLCNKA-203ENST00000439316 PRKAR2AP13861 404 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms