RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 EPHX2P34913 555 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 PSEN1P49768 467 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 CCDC117Q8IWD4 279 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 UNC5BQ8IZJ1 945 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 SIX6OS1Q8N1H7 587 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 CNDP1Q96KN2 507 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 RTKNQ9BST9 563 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 IL22Q9GZX6 179 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 CDH19Q9H159 772 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 NXF3Q9H4D5 531 aaKnown RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 CNGB3Q9NQW8 809 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 WASF2Q9Y6W5 498 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 ZCWPW2A0A1B0GU75 182 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 M0QYT0 321 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 LYPLA1O75608 230 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 SMPD1P17405 629 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 CYP2B6P20813 491 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 TKTP29401 623 aaKnown RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 SERPINB6P35237 376 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 MAP3K21Q5TCX8 1036 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 USP50Q70EL3 339 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 PID1Q7Z2X4 250 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 SETD3Q86TU7 594 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 DCLK2Q8N568 766 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 LRRN4Q8WUT4 740 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 PPP1R2P1Q96PQ5 205 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 KCNK16Q96T55 309 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 MAGEB5Q9BZ81 275 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 PPP1R12CQ9BZL4 782 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 MRGBPQ9NV56 204 aa13.97□□□□□ -0.17
COL6A3-207ENST00000433762 KLHL8Q9P2G9 620 aaPredicted RBP13.97□□□□□ -0.17
COL6A3-207ENST00000433762 SLCO1B7G3V0H7 640 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 BUD23O43709 281 aaKnown RBP13.96□□□□□ -0.17
COL6A3-207ENST00000433762 PEX1O43933 1283 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 TRIM13O60858 407 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 COL6A2P12110 1019 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 PTPN1P18031 435 aaKnown RBP13.96□□□□□ -0.17
COL6A3-207ENST00000433762 LILRA4P59901 499 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 GALNT2Q10471 571 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 GRB14Q14449 540 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 ARL13BQ3SXY8 428 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 ANKRD20A4Q4UJ75 823 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 DHDDSQ86SQ9 333 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 TMEM126BQ8IUX1 230 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 SCML4Q8N228 414 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 TMEM86AQ8N2M4 240 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 ARHGAP18Q8N392 663 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 CCNYQ8ND76 341 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 PIP4K2CQ8TBX8 421 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 DLGAP2Q9P1A6 1054 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 GJD2Q9UKL4 321 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 PRPF19Q9UMS4 504 aaKnown RBP13.96□□□□□ -0.17
COL6A3-207ENST00000433762 ARHGAP26Q9UNA1 814 aa13.96□□□□□ -0.17
COL6A3-207ENST00000433762 CCDC189A1A4V9 331 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 CASQ2O14958 399 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-207ENST00000433762 TOP3BO95985 862 aaKnown RBP13.96□□□□□ -0.18
COL6A3-207ENST00000433762 ADAM17P78536 824 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 CRADDP78560 199 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 TTLL12Q14166 644 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-207ENST00000433762 GLRA4Q5JXX5 417 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 CLEC20AQ6ZU45 233 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 LINC00523Q86TU6 105 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 KBTBD2Q8IY47 623 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 ZFAND2BQ8WV99 257 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 ZNF669Q96BR6 464 aaPredicted RBP13.96□□□□□ -0.18
COL6A3-207ENST00000433762 LPIN3Q9BQK8 851 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 GORASP1Q9BQQ3 440 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 WDR6Q9NNW5 1121 aaKnown RBP13.96□□□□□ -0.18
COL6A3-207ENST00000433762 CDH22Q9UJ99 828 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 VPS28Q9UK41 221 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 FBXW11Q9UKB1 542 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 PTCH2Q9Y6C5 1203 aa13.96□□□□□ -0.18
COL6A3-207ENST00000433762 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-207ENST00000433762 G3V2L1 256 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 CACNG3O60359 315 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 FAM200BP0CF97 657 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 SMIM10L2AP0DMW4 78 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 SMIM10L2BP0DMW5 78 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 ERVK-10P10266 1014 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 ERCC2P18074 760 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 TPI1P60174 286 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 COG7P83436 770 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 ITGA9Q13797 1035 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 SNX17Q15036 470 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 RAB41Q5JT25 222 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 UBXN11Q5T124 520 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 NAPEPLDQ6IQ20 393 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 FSTL4Q6MZW2 842 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 DLK2Q6UY11 383 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 ACAD11Q709F0 780 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 STRA8Q7Z7C7 330 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 OSTM1Q86WC4 334 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 MAML3Q96JK9 1138 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 FCRL3Q96P31 734 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-207ENST00000433762 TSGA13Q96PP4 275 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 PIGVQ9NUD9 493 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 PNPOQ9NVS9 261 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 IQCA1LA6NCM1 817 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 GLDCP23378 1020 aa13.95□□□□□ -0.18
COL6A3-207ENST00000433762 CYP2C18P33260 490 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms