RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CCDC144NLQ6NUI1 221 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 ZNF790Q6PG37 636 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CLEC9AQ6UXN8 241 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 KRT77Q7Z794 578 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 RASAL3Q86YV0 1011 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 FUKQ8N0W3 1084 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 TMEM132CQ8N3T6 1108 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 ANKRD44Q8N8A2 993 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 SOCS4Q8WXH5 440 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 SH3KBP1Q96B97 665 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 FAM89AQ96GI7 184 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 ERO1AQ96HE7 468 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 REXO5Q96IC2 774 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 EIF3CQ99613 913 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 C17orf80Q9BSJ5 609 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 GPR87Q9BY21 358 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CCDC134Q9H6E4 229 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 GALNT9Q9HCQ5 603 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 FBXO28Q9NVF7 368 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 INTS13Q9NVM9 706 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CNOT7Q9UIV1 285 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 KCND3Q9UK17 655 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 DRG1Q9Y295 367 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 TRIM17Q9Y577 477 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 ARID1BQ8NFD5 2236 aaPredicted RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 DDX60Q8IY21 1712 aaKnown RBP4.46□□□□□ -1.69
HMGB3-203ENST00000430118 MKI67P46013 3256 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 GOLGA6L10A0A0M3HER8 536 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 C3orf70A6NLC5 250 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 KIF28PB7ZC32 967 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 STX16-NPEPL1H3BU86 382 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 PSMD9O00233 223 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 STX16O14662 325 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CLGNO14967 610 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 NKX2-8O15522 239 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TULP3O75386 442 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ONECUT2O95948 504 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 F9P00740 461 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TMEM225BP0DP42 221 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ALOX12P18054 663 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 NTSR1P30989 418 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 APOBEC3AP31941 199 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 STAT1P42224 750 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 RAD52P43351 418 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 PCP4P48539 62 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 MMP14P50281 582 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CCR9P51686 369 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 VAV2P52735 878 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ARF3P61204 181 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CXADRP78310 365 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ARF1P84077 181 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TLE3Q04726 772 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ITIH3Q06033 890 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CXCL9Q07325 125 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 THOC5Q13769 683 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CBFBQ13951 182 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CAMK1Q14012 370 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ERV3-1Q14264 604 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CCNG2Q16589 344 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CYP2A13Q16696 494 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TSTQ16762 297 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 AAK1Q2M2I8 961 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 PRICKLE4Q2TBC4 344 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 AASDHQ4L235 1098 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 PDCD4Q53EL6 469 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 SLC45A4Q5BKX6 768 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CBWD5Q5RIA9 395 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TAF3Q5VWG9 929 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 B3GNTL1Q67FW5 361 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TCTN3Q6NUS6 607 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 OLFM4Q6UX06 510 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 MAMDC4Q6UXC1 1216 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 KIF6Q6ZMV9 814 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 FAM71DQ8N9W8 422 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ANKRD52Q8NB46 1076 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 NFKBIDQ8NI38 313 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 NOC3LQ8WTT2 800 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 SLC22A17Q8WUG5 538 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 TMEM171Q8WVE6 324 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ATG4AQ8WYN0 398 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 VPS50Q96JG6 964 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 PPP1R10Q96QC0 940 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 CRAMP1Q96RY5 1269 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 HTATIP2Q9BUP3 242 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 AMBRA1Q9C0C7 1298 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 ACAD9Q9H845 621 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 SMYD2Q9NRG4 433 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 AURKAIP1Q9NWT8 199 aaPredicted RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 EIF2B4Q9UI10 523 aaKnown RBP4.46□□□□□ -1.7
HMGB3-203ENST00000430118 SERTAD3Q9UJW9 196 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 GPR34Q9UPC5 381 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 SZT2Q5T011 3432 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 BRCA2P51587 3418 aa4.46□□□□□ -1.7
HMGB3-203ENST00000430118 COL4A5P29400 1685 aa4.45□□□□□ -1.7
HMGB3-203ENST00000430118 KRTAP23-1A1A580 65 aa4.45□□□□□ -1.7
HMGB3-203ENST00000430118 NPEPPSL1A6NEC2 478 aa4.45□□□□□ -1.7
HMGB3-203ENST00000430118 GAGE10A6NGK3 116 aa4.45□□□□□ -1.7
HMGB3-203ENST00000430118 RNASET2O00584 256 aaKnown RBP4.45□□□□□ -1.7
HMGB3-203ENST00000430118 SLC16A3O15427 465 aaKnown RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms