RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ADRA1BP35368 520 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 CDC42EP1Q00587 391 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 WASHC5Q12768 1159 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 ITGA9Q13797 1035 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 SLC25A52Q3SY17 297 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 WLSQ5T9L3 541 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 ADGRD1Q6QNK2 874 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 BZW1Q7L1Q6 419 aaKnown RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 SLC26A9Q7LBE3 791 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 TMEM173Q86WV6 379 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 CASP10Q92851 521 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 ZNF560Q96MR9 790 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 RTP3Q9BQQ7 232 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 COLEC11Q9BWP8 271 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 OSBPL1AQ9BXW6 950 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 OSER1Q9NX31 292 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 TMEM216Q9P0N5 145 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 AK5Q9Y6K8 562 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 H3BRJ5 948 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 CNTN5O94779 1100 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 APOEP02649 317 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 PRSS56P0CW18 603 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 IRF1P10914 325 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 HOXD8P13378 290 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 ARFIP2P53365 341 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 PDK2Q15119 407 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 KLHL38Q2WGJ6 581 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 C17orf99Q6UX52 265 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 GBP7Q8N8V2 638 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 KLHDC9Q8NEP7 349 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 CD99L2Q8TCZ2 262 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 SLC44A1Q8WWI5 657 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 SUDS3Q9H7L9 328 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 C20orf96Q9NUD7 363 aaPredicted RBP8.57□□□□□ -1.04
CD44-208ENST00000428726 VPS13AQ96RL7 3174 aa8.57□□□□□ -1.04
CD44-208ENST00000428726 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 IQANK1A0A1B0GTG1 560 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 A0A1W2PQH9 124 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MBLAC1A4D2B0 266 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 C9JVG2 144 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 DPYSL4O14531 572 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 RFPL1O75677 317 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 T-ENOLP0DO92 83 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 TUBP50607 506 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 EPHB1P54762 984 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 ADAM17P78536 824 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MPP1Q00013 466 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PSMD5Q16401 504 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PDK4Q16654 411 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MGAT5BQ3V5L5 792 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 OVOS1Q6IE37 1185 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 STRA8Q7Z7C7 330 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 SLC26A11Q86WA9 606 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 C10orf107Q8IVU9 208 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 SH3RF2Q8TEC5 729 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 AUTS2Q8WXX7 1259 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MYEOVQ96EZ4 313 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 NUDCD1Q96RS6 583 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 DDX50Q9BQ39 737 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 SMPD4Q9NXE4 827 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 GTF2IRD1Q9UHL9 959 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MTO1Q9Y2Z2 717 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 KCTD3Q9Y597 815 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 LAMA1P25391 3075 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 ARHGAP42A6NI28 874 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 VAPBO95292 243 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 ARRB2P32121 409 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 DAOAP59103 153 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PCBP1Q15365 356 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-208ENST00000428726 THEMIS2Q5TEJ8 643 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 SLC9A4Q6AI14 798 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PRSS55Q6UWB4 352 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 RTN4RL1Q86UN2 441 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 CRYBG2Q8N1P7 616 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 LRRC52Q8N7C0 313 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 MZB1Q8WU39 189 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PDCD6IPQ8WUM4 868 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 TEKT4Q8WW24 435 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 OXNAD1Q96HP4 312 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 SCYL1Q96KG9 808 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 EBNA1BP2Q99848 306 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 TBC1D10AQ9BXI6 508 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 ZFYVE28Q9HCC9 887 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 SSU72Q9NP77 194 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 NOP53Q9NZM5 478 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 TLL2Q9Y6L7 1015 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 E9PBE3 544 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 J3KR12 359 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 TK2O00142 265 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 GPR39O43194 453 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 KLHL41O60662 606 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 PQBP1O60828 265 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 PDE5AO76074 875 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 ALDOAP04075 364 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 SNRPAP09012 282 aaKnown RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 TGM2P21980 687 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 CD68P34810 354 aaPredicted RBP8.56□□□□□ -1.04
CD44-208ENST00000428726 BNIP1Q12981 228 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 LPIN1Q14693 890 aa8.56□□□□□ -1.04
CD44-208ENST00000428726 DPYSL2Q16555 572 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms