RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 MSLNQ13421 630 aaPredicted RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 FLOT2Q14254 428 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 TMEM259Q4ZIN3 620 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 TEX44Q53QW1 395 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 SDHAF4Q5VUM1 108 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CWF19L1Q69YN2 538 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 SH2D5Q6ZV89 423 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 ZNF567Q8N184 647 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CDKL2Q92772 493 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 LPPQ93052 612 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 THEGQ9P2T0 379 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 SFMBT1Q9UHJ3 866 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 RUVBL2Q9Y230 463 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 DTNAQ9Y4J8 743 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 WNK3Q9BYP7 1800 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CAPN14A8MX76 684 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 E7ESA3 106 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ZBTB24O43167 697 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 WFS1O76024 890 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 VAPBO95292 243 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 DHRS4L1P0CG22 281 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PSMC3P17980 439 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 VCLP18206 1134 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 NMBRP28336 390 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 CDH13P55290 713 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ART3Q13508 389 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MXD4Q14582 209 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 PDK3Q15120 406 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MBLAC2Q68D91 279 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 FSTL4Q6MZW2 842 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 DRICH1Q6PGQ1 229 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 ZPBP2Q6X784 338 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PIGZQ86VD9 579 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 RELL1Q8IUW5 271 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PARP8Q8N3A8 854 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 UBR7Q8N806 425 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 KLRG1Q96E93 195 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MCRS1Q96EZ8 462 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 CYP2S1Q96SQ9 504 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 DHRS4Q9BTZ2 278 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SNX25Q9H3E2 840 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SOX17Q9H6I2 414 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 CAAP1Q9H8G2 361 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SLC2A6Q9UGQ3 507 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TMA7Q9Y2S6 64 aaKnown RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 NUP214P35658 2090 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 GREB1LQ9C091 1923 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 A0A0U1RQS6 177 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SDR42E2A6NKP2 422 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ABLIM1O14639 778 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MAFGO15525 162 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ZNF189O75820 626 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 COX4I1P13073 169 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 NCAM1P13591 858 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MAXP61244 160 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MS4A2Q01362 244 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PTPRCAPQ14761 206 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TARBP2Q15633 366 aaKnown RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 PPP1R3AQ16821 1122 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 OLFML1Q6UWY5 402 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TRIM74Q86UV6 250 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TRIM73Q86UV7 250 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 MYO1HQ8N1T3 1032 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TMCO5AQ8N6Q1 288 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 LRGUKQ96M69 825 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 EPAS1Q99814 870 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TRPV6Q9H1D0 765 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 LRRC4Q9HBW1 653 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 AURKCQ9UQB9 309 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 LZTS1Q9Y250 596 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TDRKHQ9Y2W6 561 aaKnown RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 SHROOM3Q8TF72 1996 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 KIF3CO14782 793 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 CHADO15335 359 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PLA2G6O60733 806 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PRKCGP05129 697 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 C2P06681 752 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PTPN1P18031 435 aaKnown RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 FKBP1AP62942 108 aaKnown RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 TAP1Q03518 808 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 LAMC2Q13753 1193 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 DGKDQ16760 1214 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SH2D4BQ5SQS7 431 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 NCBP2-AS2Q69YL0 99 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 CHST15Q7LFX5 561 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 FLAD1Q8NFF5 587 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 GPR152Q8TDT2 470 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ATP6V1E2Q96A05 226 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 TMIGD2Q96BF3 282 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 ZNF512Q96ME7 567 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 HBEGFQ99075 208 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 GATA5Q9BWX5 397 aaPredicted RBP8.84□□□□□ -0.99
USP40-203ENST00000427112 BRD8Q9H0E9 1235 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 DDIT4Q9NX09 232 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 UBAP1Q9NZ09 502 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 PCDHGC3Q9UN70 934 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SNX13Q9Y5W8 968 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 NFASCO94856 1347 aa8.84□□□□□ -0.99
USP40-203ENST00000427112 SAC3D1A6NKF1 404 aa8.83□□□□□ -1
USP40-203ENST00000427112 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms