RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TSC1Q92574 1164 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 WBP2Q969T9 261 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 ZFYVE19Q96K21 471 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 FAM83CQ9BQN1 747 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 SPON2Q9BUD6 331 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 C2orf49Q9BVC5 232 aaPredicted RBP10.37□□□□□ -0.75
CD44-207ENST00000425428 SP110Q9HB58 689 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 DNAJC17Q9NVM6 304 aaKnown RBP10.37□□□□□ -0.75
CD44-207ENST00000425428 PLK2Q9NYY3 685 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 VPS28Q9UK41 221 aa10.37□□□□□ -0.75
CD44-207ENST00000425428 SHROOM3Q8TF72 1996 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 CFAP69A5D8W1 941 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 C3orf70A6NLC5 250 aaPredicted RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 HACD1B0YJ81 288 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 LOC730098B7Z3J9 87 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 GREM1O60565 184 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 APODP05090 189 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 CYP17A1P05093 508 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 ATP5BP06576 529 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 GLULP15104 373 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 POLR2EP19388 210 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 EIF2DP41214 584 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 GNA12Q03113 381 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 XRCC4Q13426 336 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 TAZQ16635 292 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 TMCO4Q5TGY1 634 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 DCAF12L1Q5VU92 463 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 RETSATQ6NUM9 610 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 DARS2Q6PI48 645 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 RHBDF2Q6PJF5 856 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 METTL3Q86U44 580 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 CDKL3Q8IVW4 592 aaPredicted RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 AHI1Q8N157 1196 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 UMODL1-AS1Q8N2C9 162 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 SLC44A3Q8N4M1 653 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 PLD5Q8N7P1 536 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 WFIKKN2Q8TEU8 576 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 TFB1MQ8WVM0 346 aaKnown RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 RSAD2Q8WXG1 361 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 LRRC45Q96CN5 670 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 CCDC114Q96M63 670 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 PRICKLE1Q96MT3 831 aaPredicted RBP10.36□□□□□ -0.75
CD44-207ENST00000425428 ATP13A1Q9HD20 1204 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 TRPV5Q9NQA5 729 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 SLC25A13Q9UJS0 675 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 ZNF148Q9UQR1 794 aa10.36□□□□□ -0.75
CD44-207ENST00000425428 CTAGE15A4D2H0 777 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 I6L893 689 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 DCLK1O15075 740 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 TIMM44O43615 452 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 CNTN5O94779 1100 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 PENKP01210 267 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 CTAGE8P0CG41 777 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 SRFP11831 508 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 ARSAP15289 507 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 IL4RP24394 825 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 HOXD9P28356 352 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 EIF3EP60228 445 aaKnown RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 ST8SIA6P61647 398 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 TUBB4BP68371 445 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 AP1B1Q10567 949 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 ALFQ53S48 1182 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 FYB2Q5VWT5 728 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 NCBP2-AS2Q69YL0 99 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 HEATR6Q6AI08 1181 aaKnown RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 ANKS1BQ7Z6G8 1248 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 CTAGE6Q86UF2 777 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 CIR1Q86X95 450 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 CTAGE4Q8IX94 777 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 CCDC105Q8IYK2 499 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 ZNF683Q8IZ20 524 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 NAT16Q8N8M0 369 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 ST13P5Q8NFI4 369 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 COG1Q8WTW3 980 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 MAGOHBQ96A72 148 aaKnown RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 ACDQ96AP0 544 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 RSPRY1Q96DX4 576 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 SHDQ96IW2 340 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 MS4A14Q96JA4 679 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 ASB2Q96Q27 587 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 PLA2G2FQ9BZM2 168 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 FBXL21Q9UKT6 434 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 PLA2G4CQ9UP65 541 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 SORCS3Q9UPU3 1222 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 TBC1D30Q9Y2I9 924 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 KIF26AQ9ULI4 1882 aaPredicted RBP10.35□□□□□ -0.75
CD44-207ENST00000425428 MIA3Q5JRA6 1907 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 TICRRQ7Z2Z1 1910 aa10.35□□□□□ -0.75
CD44-207ENST00000425428 RASA4BC9J798 803 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 MAN2B1O00754 1011 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ZNF185O15231 689 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 RASA4O43374 803 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CACNG3O60359 315 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 GAS8O95995 478 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 ASLP04424 464 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 CHRNA3P32297 505 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 TNNT3P45378 269 aaPredicted RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 OTUD4Q01804 1114 aaKnown RBP10.34□□□□□ -0.75
CD44-207ENST00000425428 ZNF33AQ06730 810 aa10.34□□□□□ -0.75
CD44-207ENST00000425428 BYSLQ13895 437 aaKnown RBP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms