RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 BRSK1Q8TDC3 778 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 KCTD4Q8WVF5 259 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PEX13Q92968 403 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 DNAJC7Q99615 494 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 IER2Q9BTL4 223 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 DDX43Q9NXZ2 648 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 IFT52Q9Y366 437 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 WASF2Q9Y6W5 498 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ANKRD63C9JTQ0 380 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 M0QX08 132 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ADAMTS3O15072 1205 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PMM2O15305 246 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 KCNJ13O60928 360 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 EOMESO95936 686 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PPM1AP35813 382 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 HNRNPFP52597 415 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 FOLH1Q04609 750 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ACSBG2Q5FVE4 666 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 RWDD4Q6NW29 188 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 MAMSTRQ6ZN01 415 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 C11orf96Q7Z7L8 435 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 HIPK4Q8NE63 616 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 DPF3Q92784 378 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ZNF717Q9BY31 904 aaPredicted RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 TMEM117Q9H0C3 514 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 CCDC134Q9H6E4 229 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PARVAQ9NVD7 372 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 HMGXB4Q9UGU5 601 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 USTQ9Y2C2 406 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 DNAJC16Q9Y2G8 782 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 FOCADQ5VW36 1801 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ILVBLA1L0T0 632 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 TREHO43280 583 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 RECQL4O94761 1208 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 MTA2O94776 668 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 MYO1DO94832 1006 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 MAP4P27816 1152 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 STT3AP46977 705 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 SLC24A5Q71RS6 500 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 EPS8L3Q8TE67 593 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 RFFLQ8WZ73 363 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 YME1L1Q96TA2 773 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 PABPC3Q9H361 631 aaKnown RBP10.02□□□□□ -0.81
USP54-205ENST00000424265 USP29Q9HBJ7 922 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 GJD2Q9UKL4 321 aa10.02□□□□□ -0.81
USP54-205ENST00000424265 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 LACTBL1A8MY62 500 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 RALAP11233 206 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 VCLP18206 1134 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 RABGAP1LQ5R372 815 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 POTEHQ6S545 545 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 GSTA5Q7RTV2 222 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 NET1Q7Z628 596 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 TRIM56Q9BRZ2 755 aaKnown RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 FAM105AQ9NUU6 356 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 DCTN4Q9UJW0 460 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 VPS4AQ9UN37 437 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 GNEQ9Y223 722 aaKnown RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 AP4S1Q9Y587 144 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 LOC105371267A0A1B0GV96 52 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 TGFB1I1O43294 461 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 MFN2O95140 757 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 GZMAP12544 262 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 SLC9A1P19634 815 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 CCND3P30281 292 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 SF3B4Q15427 424 aaKnown RBP eCLIP10.01□□□□□ -0.81
USP54-205ENST00000424265 DNAL1Q4LDG9 190 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 ZNF354CQ86Y25 554 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 AGPAT5Q9NUQ2 364 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 AMACRQ9UHK6 382 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 ADAMTSL1Q8N6G6 1762 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 C1orf232A0A0U1RR37 186 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 FAM155AB1AL88 458 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 ARHGEF9O43307 516 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 PTPN2P17706 415 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 ARF4P18085 180 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 DLG4P78352 724 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 NFE2L1Q14494 772 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 ACAP2Q15057 778 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 ZNF829Q3KNS6 432 aaPredicted RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 EXD1Q8NHP7 514 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 CKAP2Q8WWK9 683 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 BIRC8Q96P09 236 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 DEPDC7Q96QD5 511 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 C16orf70Q9BSU1 422 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 SIAEQ9HAT2 523 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 PLK2Q9NYY3 685 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 KLHL42Q9P2K6 505 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 AREL1O15033 823 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 PRPSAP2O60256 369 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 RNASEH2AO75792 299 aaKnown RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 KRT15P19012 456 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 PMS1P54277 932 aaKnown RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 VCPP55072 806 aaKnown RBP10.01□□□□□ -0.81
USP54-205ENST00000424265 PLD1Q13393 1074 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 SLC29A2Q14542 456 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 TGFBIQ15582 683 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 INSCQ1MX18 579 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 SPDYAQ5MJ70 313 aa10.01□□□□□ -0.81
USP54-205ENST00000424265 CORO6Q6QEF8 472 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms