RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 P4HA1P13674 534 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 NPPBP16860 134 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 CDKN1AP38936 164 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 KIR2DL1P43626 348 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 KIR2DL2P43627 348 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 PDE6CP51160 858 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 CORO7P57737 925 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 CTXN1P60606 82 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 HSD11B2P80365 405 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SRSF3P84103 164 aaKnown RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 NSUN2Q08J23 767 aaKnown RBP eCLIP2.74□□□□□ -1.97
MCF2-204ENST00000414978 AP1B1Q10567 949 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 KCNMA1Q12791 1236 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 MYO1EQ12965 1108 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 CUL4AQ13619 759 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 E2F5Q15329 346 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SETMARQ53H47 684 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 ARL13AQ5H913 290 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 SH2D4BQ5SQS7 431 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 AKNAD1Q5T1N1 836 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 ATXN7L2Q5T6C5 722 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 NFRKBQ6P4R8 1299 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 C22orf34Q6ZV56 151 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 GALNTL5Q7Z4T8 443 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 PLEKHH3Q7Z736 793 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SPPL2CQ8IUH8 684 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 PLXDC1Q8IUK5 500 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SUGP2Q8IX01 1082 aaKnown RBP eCLIP2.74□□□□□ -1.97
MCF2-204ENST00000414978 FAM126BQ8IXS8 530 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 TDHQ8IZJ6 230 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 DEFB123Q8N688 67 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 DTX3Q8N9I9 347 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SLC4A11Q8NBS3 891 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 ABHD4Q8TB40 342 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 ZFAND2BQ8WV99 257 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 DCPSQ96C86 337 aaKnown RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 ZBED3Q96IU2 234 aaPredicted RBP2.74□□□□□ -1.97
MCF2-204ENST00000414978 MED15Q96RN5 788 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SPATA25Q9BR10 227 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 APOL6Q9BWW8 343 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 JMJD4Q9H9V9 463 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 NECTIN3Q9NQS3 549 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 SIRT5Q9NXA8 310 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 HDAC5Q9UQL6 1122 aa2.74□□□□□ -1.97
MCF2-204ENST00000414978 A0A087WWL8 130 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 UBE2QL1A1L167 161 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 CXorf49A8MYA2 514 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 CUTAO60888 179 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 HAUS5O94927 633 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 F9P00740 461 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 FCER1AP12319 257 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 VIPR1P32241 457 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 KIR2DL3P43628 341 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 TRPC1P48995 793 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PGDP52209 483 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 RARSP54136 660 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 CHRNEQ04844 493 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 SGCGQ13326 291 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 MAMLD1Q13495 774 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 TTC22Q5TAA0 569 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 C6orf163Q5TEZ5 329 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ABLIM2Q6H8Q1 611 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 INO80CQ6PI98 192 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 PRPF39Q86UA1 669 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 CCDC13Q8IYE1 715 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PLA2G15Q8NCC3 412 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PSD4Q8NDX1 1056 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 NUDT10Q8NFP7 164 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 KBTBD7Q8WVZ9 684 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 NUDT11Q96G61 164 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PRR11Q96HE9 360 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 DPCDQ9BVM2 203 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 CPEB1Q9BZB8 566 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 OR10A4Q9H209 315 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ALKBH4Q9NXW9 302 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ZHX1Q9UKY1 873 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 DERAQ9Y315 318 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PTRH2Q9Y3E5 179 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 PIK3R2O00459 728 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 CCNT2O60583 730 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 HEXIM1O94992 359 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 CBX6O95503 412 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 FTCDO95954 541 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PRKCBP05771 671 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 FESP07332 822 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ACADMP11310 421 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ATF2P15336 505 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 RPS2P15880 293 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 KLRC1P26715 233 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 TLX1P31314 330 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 NAP1L1P55209 391 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 NPEPPSP55786 919 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 POU6F2P78424 691 aaPredicted RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 PTP4A2Q12974 167 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 FRG1Q14331 258 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 UBXN2BQ14CS0 331 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 PABPC1LQ4VXU2 614 aaKnown RBP2.73□□□□□ -1.97
MCF2-204ENST00000414978 RUNDC3AQ59EK9 446 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 ZNF365Q70YC5 407 aa2.73□□□□□ -1.97
MCF2-204ENST00000414978 WDTC1Q8N5D0 677 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms