RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 HNRNPCL1O60812 293 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 FSBPO95073 299 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 INHAP05111 366 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CCNB1P14635 433 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINB5P36952 375 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GP5P40197 560 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CD86P42081 329 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 HTRA3P83110 453 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TRIM32Q13049 653 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TMEM259Q4ZIN3 620 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 ELMSAN1Q6PJG2 1045 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 NUP93Q8N1F7 819 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 RSPH1Q8WYR4 309 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 DPF3Q92784 378 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 PIWIL1Q96J94 861 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GPR88Q9GZN0 384 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SCUBE2Q9NQ36 999 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 AAASQ9NRG9 546 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SF3B1O75533 1304 aaKnown RBP eCLIP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 MEIS3P2A8K0S8 358 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 ATP5C1P36542 298 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 IRX1P78414 480 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 MRNIPQ6NTE8 343 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 POU5F2Q8N7G0 328 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CPT1BQ92523 772 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 PBXIP1Q96AQ6 731 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 MTIF3Q9H2K0 278 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 DLGAP2Q9P1A6 1054 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 PCDHB12Q9Y5F1 795 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 C2orf81A6NN90 581 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TM9SF1O15321 606 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TIMM44O43615 452 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 PAGE1O75459 146 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 MTA2O94776 668 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ANP32DO95626 131 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 SLC5A3P53794 718 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 CTBP1Q13363 440 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 NOMO1Q15155 1222 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 PCBP1Q15365 356 aaKnown RBP eCLIP11.41□□□□□ -0.582e-6■■■■□ 20.8
PTPRF-204ENST00000412568 FNBP1LQ5T0N5 605 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 CERCAMQ5T4B2 595 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TSPAN17Q96FV3 270 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 KCTD15Q96SI1 283 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-204ENST00000412568 MECRQ9BV79 373 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 UBXN6Q9BZV1 441 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 RRN3Q9NYV6 651 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 C9IYK1 514 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 IQCF3P0C7M6 154 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 GJA9P57773 515 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 PARP6Q2NL67 630 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 POM121L1PQ3SYA9 428 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ANKRD20A4Q4UJ75 823 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 OTOP3Q7RTS5 596 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 OR6K2Q8NGY2 324 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 PCDH19Q8TAB3 1148 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 NCLNQ969V3 563 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 GEMIN8Q9NWZ8 242 aaKnown RBP11.41□□□□□ -0.58
PTPRF-204ENST00000412568 FAM50BQ9Y247 325 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 NWD2Q9ULI1 1742 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 USP54Q70EL1 1684 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ALOX15BO15296 676 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TBX18O95935 607 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 HMOX2P30519 316 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ACLYP53396 1101 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 RASA2Q15283 850 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TMEM154Q6P9G4 183 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 B3GNT9Q6UX72 402 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 CMC1Q7Z7K0 106 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 CCNJLQ8IV13 435 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 PSTKQ8IV42 348 aaKnown RBP11.41□□□□□ -0.58
PTPRF-204ENST00000412568 YAF2Q8IY57 180 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 TNS4Q8IZW8 715 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 SPOCK2Q92563 424 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ILKAPQ9H0C8 392 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-204ENST00000412568 ZDHHC18Q9NUE0 388 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 GMIPQ9P107 970 aa11.41□□□□□ -0.58
PTPRF-204ENST00000412568 SIPA1L3O60292 1781 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 F7P08709 466 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 HDCP19113 662 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 EDNRBP24530 442 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 NFKBIAP25963 317 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINB3P29508 390 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINB8P50452 374 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 MTFR1Q15390 333 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 LDLRAD1Q5T700 205 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 LRRC8EQ6NSJ5 796 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 RFWD3Q6PCD5 774 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 HFE2Q6ZVN8 426 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SLC26A9Q7LBE3 791 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 CIR1Q86X95 450 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 DDX1Q92499 740 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 SH3KBP1Q96B97 665 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 EFHD1Q9BUP0 239 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 MYLK2Q9H1R3 596 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 V9GYQ6 96 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 CCL22O00626 93 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 F2P00734 622 aa11.4□□□□□ -0.58
PTPRF-204ENST00000412568 TUFMP49411 452 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 DDX39BQ13838 428 aaKnown RBP11.4□□□□□ -0.58
PTPRF-204ENST00000412568 CNGA3Q16281 694 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms