RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 LIN52Q52LA3 116 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 NAPEPLDQ6IQ20 393 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 LBX2Q6XYB7 198 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 ILDR2Q71H61 639 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 RIOX2Q8IUF8 465 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 SIGLEC10Q96LC7 697 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 NR1H4Q96RI1 486 aaPredicted RBP16.48■□□□□ 0.23
PCDH1-203ENST00000394536 DLEC1Q9Y238 1755 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 STMN1P16949 149 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 MBTD1Q05BQ5 628 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 GSTA3Q16772 222 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 CWF19L1Q69YN2 538 aaKnown RBP16.48■□□□□ 0.23
PCDH1-203ENST00000394536 ATPAF2Q8N5M1 289 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 FZD8Q9H461 694 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 KRT82Q9NSB4 513 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 SORCS3Q9UPU3 1222 aa16.48■□□□□ 0.23
PCDH1-203ENST00000394536 ATP6AP2A0A1C7CYW4 349 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ADM5C9JUS6 153 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ATP6AP2O75787 350 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 CD4P01730 458 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 SETSIPP0DME0 302 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 LMO2P25791 158 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ETV4P43268 484 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 MRPS5P82675 430 aaKnown RBP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 PLOD1Q02809 727 aaPredicted RBP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ENPEPQ07075 957 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 FAM192AQ9GZU8 254 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 NACA2Q9H009 215 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 CNTN6Q9UQ52 1028 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 SORBS2O94875 1100 aaKnown RBP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 HNRNPLP14866 589 aaKnown RBP eCLIP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ME2P23368 584 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 FAM83EQ2M2I3 478 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 TMEM198Q66K66 360 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 SNX31Q8N9S9 440 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 PDZD7Q9H5P4 517 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 WDR41Q9HAD4 459 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 PTPRHQ9HD43 1115 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 UBA6A0AVT1 1052 aaPredicted RBP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 TK2O00142 265 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 DDHD2O94830 711 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 FESP07332 822 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 USP17L7P0C7H9 530 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 NFKB1P19838 968 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ICAM3P32942 547 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 UGP2Q16851 508 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 SOWAHAQ2M3V2 549 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 PPHLN1Q8NEY8 458 aaKnown RBP16.47■□□□□ 0.23
PCDH1-203ENST00000394536 TRAPPC9Q96Q05 1148 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ULBP1Q9BZM6 244 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 MAST2Q6P0Q8 1798 aa16.47■□□□□ 0.23
PCDH1-203ENST00000394536 ABLIM1O14639 778 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 CHRNGP07510 517 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 UQCRBP14927 111 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 YBX3P16989 372 aaKnown RBP eCLIP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 PSMC3P17980 439 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 RPL14P50914 215 aaKnown RBP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 CHN2P52757 468 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 NSUN2Q08J23 767 aaKnown RBP eCLIP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 GRIK4Q16099 956 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 FRMD7Q6ZUT3 714 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 RAB44Q7Z6P3 723 aaPredicted RBP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 NXF3Q9H4D5 531 aaKnown RBP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 IPO11Q9UI26 975 aaKnown RBP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ZNF711Q9Y462 761 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 NDUFV1P49821 464 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 DLG1Q12959 904 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 TEDDM1Q5T9Z0 273 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 SLC41A1Q8IVJ1 513 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ANKRD52Q8NB46 1076 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 CATSPER1Q8NEC5 780 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ACMSDQ8TDX5 336 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 OPTNQ96CV9 577 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ADGRA2Q96PE1 1338 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 PIK3R1P27986 724 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 L1CAMP32004 1257 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 FSTL4Q6MZW2 842 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 PLPPR4Q7Z2D5 763 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 PSTKQ8IV42 348 aaKnown RBP16.46■□□□□ 0.23
PCDH1-203ENST00000394536 FBXW8Q8N3Y1 598 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 MTMR14Q8NCE2 650 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 HASPINQ8TF76 798 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 NDNQ99608 321 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 NPAS2Q99743 824 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 FICDQ9BVA6 458 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 TRPC7Q9HCX4 862 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ARHGEF4Q9NR80 690 aa16.46■□□□□ 0.23
PCDH1-203ENST00000394536 ARHGEF37A1IGU5 675 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 A6NHS1 94 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 PLIN5Q00G26 463 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 YWHAHQ04917 246 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-203ENST00000394536 SPANXN3Q5MJ09 141 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 GALNT15Q8N3T1 639 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 ATP6V1E2Q96A05 226 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 GATA5Q9BWX5 397 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-203ENST00000394536 GBA2Q9HCG7 927 aaPredicted RBP16.45■□□□□ 0.22
PCDH1-203ENST00000394536 SIRPGQ9P1W8 387 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 HDAC3O15379 428 aa16.45■□□□□ 0.22
PCDH1-203ENST00000394536 HNRNPCP07910 306 aaKnown RBP eCLIP16.45■□□□□ 0.22
PCDH1-203ENST00000394536 GFAPP14136 432 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms