RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ARNTLO00327 626 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 IRAK2O43187 625 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 DCXO43602 365 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 GREM1O60565 184 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 STC2O76061 302 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 PDGFRAP16234 1089 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 IL1R2P27930 398 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 MDH1P40925 334 aaKnown RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 IFNAR2P48551 515 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 ZNF143P52747 638 aaPredicted RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 AIF1P55008 147 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 TBX4P57082 545 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 MAGOHP61326 146 aaKnown RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 PPP2R2AP63151 447 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 ZXDBP98169 803 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 TAF5Q15542 800 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 SMTNL2Q2TAL5 461 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 PREPLQ4J6C6 727 aaPredicted RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 UBAP2Q5T6F2 1119 aaKnown RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 Q6ZNB5 142 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 BNIPLQ7Z465 357 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 ADGRG2Q8IZP9 1017 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 CPXM2Q8N436 756 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 ALLCQ8N6M5 410 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 CENPIQ92674 756 aaPredicted RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 TLCD1Q96CP7 247 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 SHDQ96IW2 340 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 LRRC3BQ96PB8 259 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 CNPY3Q9BT09 278 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 TMEM109Q9BVC6 243 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 CDC42EP4Q9H3Q1 356 aaKnown RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 C8orf33Q9H7E9 229 aaPredicted RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 GKN1Q9NS71 199 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 DUS2Q9NX74 493 aaKnown RBP10.5□□□□□ -0.73
VPS53-202ENST00000389040 SMPD4Q9NXE4 827 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 ZNF148Q9UQR1 794 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 EFR3BQ9Y2G0 817 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 GREB1Q4ZG55 1949 aa10.5□□□□□ -0.73
VPS53-202ENST00000389040 RNF8O76064 485 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 APOEP02649 317 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 GDI1P31150 447 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 LSP1P33241 339 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 VCPP55072 806 aaKnown RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 PRKCQQ04759 706 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 RUNX3Q13761 415 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 TAZQ16635 292 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 SKIDA1Q1XH10 827 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 P3H1Q32P28 736 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 KCNT1Q5JUK3 1230 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 ADGRF1Q5T601 910 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 IZUMO3Q5VZ72 239 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 FOXR1Q6PIV2 292 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 FAM217AQ8IXS0 508 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 CPA6Q8N4T0 437 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 ZNF557Q8N988 423 aaPredicted RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 CSGALNACT1Q8TDX6 532 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 EDAQ92838 391 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 NKD2Q969F2 451 aaPredicted RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 HAUS1Q96CS2 278 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 RSPRY1Q96DX4 576 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 PIWIL1Q96J94 861 aaKnown RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 BTN2A3PQ96KV6 586 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 RPP25Q9BUL9 199 aaKnown RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 PLA2G2FQ9BZM2 168 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 SMG9Q9H0W8 520 aaKnown RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 RETREG1Q9H6L5 497 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 DDIT4Q9NX09 232 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 SFMBT1Q9UHJ3 866 aa10.49□□□□□ -0.73
VPS53-202ENST00000389040 DRG1Q9Y295 367 aaKnown RBP10.49□□□□□ -0.73
VPS53-202ENST00000389040 KCNU1A8MYU2 1149 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 M0QYT0 321 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 MAN2B1O00754 1011 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ADH1CP00326 375 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ITGAVP06756 1048 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ASGR2P07307 311 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 GPD1P21695 349 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 KDELR1P24390 212 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 MIPP30301 263 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RDXP35241 583 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 PCK1P35558 622 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 CXCR3P49682 368 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ZXDAP98168 799 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 OASLQ15646 514 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 EML3Q32P44 896 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ITPRIPL2Q3MIP1 535 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 ARL13BQ3SXY8 428 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 MPP7Q5T2T1 576 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 C6orf118Q5T5N4 469 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 PRUNE1Q86TP1 453 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RALGPS2Q86X27 583 aaPredicted RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 SUGP1Q8IWZ8 645 aaKnown RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 ATP6V0D2Q8N8Y2 350 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 BCAS4Q8TDM0 211 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RXFP2Q8WXD0 754 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 RSAD2Q8WXG1 361 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 C1orf74Q96LT6 269 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 NELL2Q99435 816 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 FRMD8P1Q9BZ68 369 aaPredicted RBP10.48□□□□□ -0.73
VPS53-202ENST00000389040 WDCPQ9H6R7 721 aa10.48□□□□□ -0.73
VPS53-202ENST00000389040 CD320Q9NPF0 282 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms